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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
924
total RNA-seq
20
pCHi-C
16
small RNA-seq
6
single cell RNA-seq
3
snDrop-seq
2
RNA microarray
1
ATAC-seq
Assay category
946
Transcription
1
DNA accessibility
Date released
447
February, 2021
143
May, 2020
116
July, 2018
August, 2021
89
August, 2017
47
July, 2019
38
May, 2021
28
March, 2020
25
February, 2020
19
November, 2019
8
October, 2019
6
April, 2018
4
February, 2023
2
December, 2019
Available data
1907
bam
1772
bigWig
977
tsv
920
bed narrowPeak
561
bigBed narrowPeak
377
fastq
238
tagAlign
213
bed broadPeak
205
bed bed3+
176
bigBed broadPeak
txt
25
bed bedMethyl
25
bigBed bedMethyl
10
hic
9
bedpe bed3+
6
csv
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
972
Homo sapiens
Biosample type
972
tissue
270
primary cell
124
in vitro differentiated cells
102
cell line
4
stem cell
Organ
457
connective tissue
399
adipose tissue
274
pancreas
154
liver
58
bone element
23
brain
19
heart
8
blood vessel
8
vasculature
7
kidney
7
limb
7
musculature of body
5
eye
5
nerve
3
epithelium
2
artery
2
intestine
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
lung
1
ovary
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
thymus
1
urinary bladder
Project
972
AMP
Genome assembly (visualization)
918
hg19
917
GRCh38
Lab
972
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
2
audit script error
files.file_type!
bed bed3
txt
month_released!
August, 2021
BIOSAMPLE
ASSAY
972 results
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total RNA-seq
pCHi-C
small RNA-seq
single cell RNA-seq
snDrop-seq
RNA microarray
ATAC-seq
tissue
adipose tissue
381
1
islet of Langerhans
260
6
1
liver
147
1
1
bone tissue
58
subcutaneous adipose tissue
7
1
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