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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
481
total RNA-seq
104
single cell RNA-seq
20
pCHi-C
16
small RNA-seq
2
RNA microarray
1
ATAC-seq
Assay category
601
Transcription
1
DNA accessibility
Date released
February, 2021
143
May, 2020
116
July, 2018
99
August, 2021
89
August, 2017
47
July, 2019
38
May, 2021
28
March, 2020
25
February, 2020
19
November, 2019
8
October, 2019
6
April, 2018
4
February, 2023
2
December, 2019
Available data
1455
bam
1308
bigWig
956
bed narrowPeak
624
tsv
561
bigBed narrowPeak
377
fastq
238
tagAlign
213
bed broadPeak
205
bed bed3+
176
bigBed broadPeak
68
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
624
Homo sapiens
Biosample type
624
tissue
263
primary cell
109
in vitro differentiated cells
41
cell line
4
stem cell
Organ
275
pancreas
154
liver
111
heart
23
brain
14
blood vessel
14
vasculature
13
adipose tissue
13
connective tissue
7
limb
7
musculature of body
5
eye
5
nerve
4
artery
4
kidney
3
epithelium
2
intestine
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
lung
1
ovary
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
thymus
1
urinary bladder
Project
624
AMP
Genome assembly (visualization)
474
hg19
473
GRCh38
Lab
623
AMP-T2D consortium
1
Bing Ren, UCSD
Audit category:
3
inconsistent ontology term
2
audit script error
files.file_type!
bed bed3
lab.title!
Karen Mohlke, UNC
month_released!
February, 2021
BIOSAMPLE
ASSAY
624 results
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total RNA-seq
single cell RNA-seq
pCHi-C
small RNA-seq
RNA microarray
ATAC-seq
tissue
islet of Langerhans
261
6
1
liver
147
1
1
heart left ventricle
3
18
1
heart right ventricle
1
17
1
right cardiac atrium
18
1
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