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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
917
total RNA-seq
109
single cell RNA-seq
20
pCHi-C
16
small RNA-seq
3
snDrop-seq
2
RNA microarray
1
ATAC-seq
Assay category
1042
Transcription
1
DNA accessibility
Date released
452
February, 2021
143
May, 2020
116
July, 2018
99
August, 2021
89
August, 2017
47
July, 2019
38
May, 2021
28
March, 2020
25
February, 2020
19
November, 2019
October, 2019
6
April, 2018
4
February, 2023
2
December, 2019
Available data
1721
bam
1612
bigWig
1068
tsv
833
bed narrowPeak
514
bigBed narrowPeak
377
fastq
209
bed broadPeak
201
bed bed3+
189
tagAlign
172
bigBed broadPeak
157
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
10
hic
9
bedpe bed3+
6
csv
5
bed bed3
bedpe
Organism
1068
Homo sapiens
Biosample type
1068
tissue
268
primary cell
129
in vitro differentiated cells
114
cell line
4
stem cell
Organ
457
connective tissue
399
adipose tissue
275
pancreas
153
liver
109
heart
58
bone element
22
brain
14
blood vessel
14
vasculature
12
kidney
7
musculature of body
5
eye
4
artery
3
epithelium
3
limb
2
intestine
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
lung
1
nerve
1
ovary
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
thymus
1
urinary bladder
Project
1068
AMP
Genome assembly (visualization)
910
hg19
909
GRCh38
Lab
1067
AMP-T2D consortium
1
Bing Ren, UCSD
Audit category:
7
audit script error
3
inconsistent ontology term
files.file_type!
bedpe
month_released!
October, 2019
organ_slims!
mammary gland
BIOSAMPLE
ASSAY
1068 results
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total RNA-seq
single cell RNA-seq
pCHi-C
small RNA-seq
snDrop-seq
RNA microarray
ATAC-seq
tissue
adipose tissue
381
1
islet of Langerhans
261
6
1
liver
146
1
1
bone tissue
58
heart left ventricle
3
18
1
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