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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
925
total RNA-seq
109
single cell RNA-seq
20
pCHi-C
16
small RNA-seq
3
snDrop-seq
2
RNA microarray
1
ATAC-seq
Assay category
1050
Transcription
1
DNA accessibility
Date released
452
February, 2021
143
May, 2020
116
July, 2018
99
August, 2021
89
August, 2017
47
July, 2019
38
May, 2021
28
March, 2020
25
February, 2020
19
November, 2019
8
October, 2019
6
April, 2018
4
February, 2023
2
December, 2019
Available data
1815
bam
1688
bigWig
1076
tsv
900
bed narrowPeak
484
bigBed narrowPeak
362
fastq
207
bed broadPeak
203
bed bed3+
176
bigBed broadPeak
172
tagAlign
157
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
1076
Homo sapiens
Biosample type
1076
tissue
270
primary cell
131
in vitro differentiated cells
119
cell line
4
stem cell
Organ
457
connective tissue
399
adipose tissue
275
pancreas
154
liver
111
heart
58
bone element
23
brain
14
blood vessel
14
vasculature
12
kidney
7
limb
7
musculature of body
5
eye
5
nerve
4
artery
3
epithelium
2
intestine
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
lung
1
ovary
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
thymus
1
urinary bladder
Project
1076
AMP
Genome assembly (visualization)
918
hg19
917
GRCh38
Lab
1075
AMP-T2D consortium
1
Bing Ren, UCSD
Audit category:
7
audit script error
3
inconsistent ontology term
month_released!
November, 2017
target.investigated_as!
RNA binding protein
BIOSAMPLE
ASSAY
1076 results
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total RNA-seq
single cell RNA-seq
pCHi-C
small RNA-seq
snDrop-seq
RNA microarray
ATAC-seq
tissue
adipose tissue
381
1
islet of Langerhans
261
6
1
liver
147
1
1
bone tissue
58
heart left ventricle
3
18
1
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