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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 925total RNA-seq
  • 109single cell RNA-seq
  • 20pCHi-C
  • 16small RNA-seq
  • 3snDrop-seq
  • 2RNA microarray
  • 1ATAC-seq
Assay category
  • 1050Transcription
  • 1DNA accessibility
Date released
  • 452February, 2021
  • 143May, 2020
  • 116July, 2018
  • 99August, 2021
  • 89August, 2017
  • 47July, 2019
  • 38May, 2021
  • 28March, 2020
  • 25February, 2020
  • 19November, 2019
  • 8October, 2019
  • 6April, 2018
  • 4February, 2023
  • 2December, 2019
Available data
  • 1907bam
  • 1772bigWig
  • 1076tsv
  • 984bed narrowPeak
  • 561bigBed narrowPeak
  • 377fastq
  • 238tagAlign
  • 213bed broadPeak
  • 205bed bed3+
  • 176bigBed broadPeak
  • 157txt
  • 64xls
  • 25bed bedMethyl
  • 25bigBed bedMethyl
  • 11hic
  • 10bedpe bed3+
  • 6csv
  • 5bed bed3
  • 1bedpe
  • 1tagAlign bed3+
Organism
  • 1076Homo sapiens
Biosample type
  • 1076tissue
  • 270primary cell
  • 131in vitro differentiated cells
  • 119cell line
  • 4stem cell
Organ
  • 457connective tissue
  • 399adipose tissue
  • 275pancreas
  • 154liver
  • 111heart
  • 58bone element
  • 23brain
  • 14blood vessel
  • 14vasculature
  • 12kidney
  • 7limb
  • 7musculature of body
  • 5eye
  • 5nerve
  • 4artery
  • 3epithelium
  • 2intestine
  • 1adrenal gland
  • 1esophagus
  • 1gonad
  • 1large intestine
  • 1lung
  • 1ovary
  • 1small intestine
  • 1spinal cord
  • 1spleen
  • 1stomach
  • 1thymus
  • 1urinary bladder
Project
  • 1076AMP
Genome assembly (visualization)
  • 918hg19
  • 917GRCh38
Lab
  • 1075AMP-T2D consortium
  • 1Bing Ren, UCSD
Audit category:
  • 7audit script error
  • 3inconsistent ontology term
BIOSAMPLE
ASSAY

1076 results

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Clear Filters
total RNA-seq
single cell RNA-seq
pCHi-C
small RNA-seq
snDrop-seq
RNA microarray
ATAC-seq
tissue
adipose tissue3811
islet of Langerhans26161
liver14711
bone tissue58
heart left ventricle3181
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