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Schema
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
942
total RNA-seq
799
ChIP-seq
256
ATAC-seq
180
single cell RNA-seq
176
DNase-seq
87
RNA microarray
28
snATAC-seq
27
WGBS
25
pCHi-C
16
Hi-C
16
small RNA-seq
11
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
Assay category
1138
Transcription
799
DNA binding
464
DNA accessibility
38
DNA methylation
16
3D chromatin structure
Target of assay
605
histone modification
604
histone
317
narrow histone mark
287
broad histone mark
156
control
40
transcription factor
25
RNA binding protein
2
nucleotide modification
Date released
545
February, 2021
242
October, 2019
229
August, 2021
193
May, 2020
163
June, 2019
151
August, 2017
120
July, 2018
115
May, 2019
95
February, 2023
82
November, 2017
80
April, 2019
77
July, 2019
66
May, 2022
59
October, 2018
47
September, 2023
40
March, 2020
40
May, 2021
40
May, 2024
40
November, 2019
25
February, 2020
19
April, 2020
15
May, 2023
15
October, 2017
14
November, 2018
13
December, 2017
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
Available data
1705
bam
1600
bigWig
987
tsv
920
bed narrowPeak
503
bigBed narrowPeak
228
tagAlign
204
bed broadPeak
193
bed bed3+
174
bigBed broadPeak
174
fastq
157
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
2571
Homo sapiens
Biosample type
2574
tissue
973
primary cell
435
cell line
377
in vitro differentiated cells
10
stem cell
Organ
520
connective tissue
461
adipose tissue
391
pancreas
313
heart
310
liver
299
kidney
260
brain
158
bone element
133
blood vessel
133
vasculature
122
limb
82
musculature of body
73
artery
56
eye
43
nerve
20
lung
19
spleen
18
ureter
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2477
AMP
47
KPMP
31
T1D
19
LungMap
Genome assembly (visualization)
1687
GRCh38
1583
hg19
Lab
2223
AMP-T2D consortium
142
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
Audit category:
91
inconsistent ontology term
9
audit script error
Audit category:
8
missing controlled_by
Audit category:
2
inconsistent control read length
files.platform.term_name!
Illumina HiSeq 2000
BIOSAMPLE
ASSAY
2574 results
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total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
DNase-seq
RNA microarray
snATAC-seq
WGBS
pCHi-C
Hi-C
small RNA-seq
RRBS
FAIRE-seq
MeRIP-seq
snDrop-seq
tissue
adipose tissue
382
3
3
1
islet of Langerhans
203
65
67
6
1
7
4
3
1
1
4
liver
167
95
20
1
1
3
1
1
1
1
kidney
49
27
75
64
13
6
1
1
1
bone element
84
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