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Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1025
total RNA-seq
876
ChIP-seq
237
ATAC-seq
180
single cell RNA-seq
172
DNase-seq
87
RNA microarray
28
snATAC-seq
27
WGBS
25
pCHi-C
16
Hi-C
16
small RNA-seq
11
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
Assay category
1221
Transcription
876
DNA binding
441
DNA accessibility
38
DNA methylation
16
3D chromatin structure
Target of assay
628
histone modification
627
histone
324
narrow histone mark
303
broad histone mark
171
control
79
transcription factor
21
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
545
February, 2021
282
August, 2017
242
October, 2019
229
August, 2021
193
May, 2020
163
June, 2019
120
July, 2018
115
May, 2019
95
February, 2023
82
November, 2017
80
April, 2019
77
July, 2019
54
October, 2018
47
September, 2023
44
December, 2017
42
May, 2022
40
March, 2020
40
May, 2021
40
May, 2024
40
November, 2019
25
February, 2020
20
November, 2018
20
October, 2017
19
April, 2020
15
May, 2023
8
January, 2021
7
January, 2019
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
Available data
1841
bam
1746
bigWig
1076
tsv
940
bed narrowPeak
538
bigBed narrowPeak
311
fastq
238
tagAlign
207
bed broadPeak
199
bed bed3+
170
bigBed broadPeak
151
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
2702
Homo sapiens
Biosample type
2711
tissue
1049
primary cell
616
cell line
393
in vitro differentiated cells
10
stem cell
Organ
535
connective tissue
476
adipose tissue
467
pancreas
354
liver
313
heart
299
kidney
265
brain
158
bone element
133
blood vessel
133
vasculature
122
limb
82
musculature of body
73
artery
56
eye
43
nerve
20
lung
18
ureter
16
skeleton
16
spleen
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2614
AMP
47
KPMP
31
T1D
19
LungMap
Genome assembly (visualization)
1833
GRCh38
1711
hg19
Lab
2383
AMP-T2D consortium
142
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
28
Kyle Gaulton, UCSD
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
91
inconsistent ontology term
27
inconsistent control
9
audit script error
Audit category:
26
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
files.platform.term_name!
Illumina HiSeq 4000
BIOSAMPLE
ASSAY
2711 results
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total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
DNase-seq
RNA microarray
snATAC-seq
WGBS
pCHi-C
Hi-C
small RNA-seq
RRBS
FAIRE-seq
MeRIP-seq
snDrop-seq
tissue
islet of Langerhans
286
71
50
6
1
7
4
3
1
1
4
adipose tissue
382
2
3
3
1
liver
167
145
20
1
1
3
1
1
1
1
kidney
49
27
75
64
13
6
1
1
1
bone element
84
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