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Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
108
ChIP-seq
89
total RNA-seq
4
ATAC-seq
2
DNase-seq
Assay category
108
DNA binding
89
Transcription
6
DNA accessibility
Target of assay
54
transcription factor
31
control
23
histone
23
histone modification
16
broad histone mark
7
narrow histone mark
3
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
133
August, 2017
35
December, 2017
15
October, 2018
12
November, 2018
8
October, 2017
Available data
203
fastq
202
bam
172
bigWig
89
tsv
64
bed narrowPeak
58
bigBed narrowPeak
12
bed bed3+
10
tagAlign
9
bed broadPeak
2
bigBed broadPeak
Organism
197
Homo sapiens
Biosample type
227
cell line
203
tissue
115
primary cell
17
in vitro differentiated cells
Organ
114
pancreas
51
liver
27
adipose tissue
27
connective tissue
6
spleen
5
brain
Project
203
AMP
Genome assembly (visualization)
172
GRCh38
172
hg19
Lab
202
AMP-T2D consortium
1
Stephen Parker, UMich
Audit category:
27
inconsistent control
Audit category:
18
missing controlled_by
Audit category:
4
inconsistent control read length
1
inconsistent assembly
BIOSAMPLE
ASSAY
203 results
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ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
tissue
islet of Langerhans
6
89
1
liver
50
1
pancreas
13
white adipose tissue
12
subcutaneous adipose tissue
9
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