Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1031
total RNA-seq
862
ChIP-seq
260
ATAC-seq
180
single cell RNA-seq
169
DNase-seq
87
RNA microarray
28
snATAC-seq
27
WGBS
25
pCHi-C
16
Hi-C
16
small RNA-seq
8
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
Assay category
1227
Transcription
862
DNA binding
461
DNA accessibility
35
DNA methylation
16
3D chromatin structure
Target of assay
600
histone modification
599
histone
313
narrow histone mark
286
broad histone mark
174
control
90
transcription factor
26
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
545
February, 2021
254
August, 2017
242
October, 2019
229
August, 2021
193
May, 2020
163
June, 2019
120
July, 2018
115
May, 2019
95
February, 2023
82
November, 2017
80
April, 2019
77
July, 2019
74
October, 2018
66
May, 2022
47
September, 2023
45
December, 2017
40
March, 2020
40
May, 2021
40
May, 2024
40
November, 2019
25
February, 2020
19
April, 2020
17
November, 2018
15
May, 2023
14
October, 2017
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
5
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
Available data
1854
bam
1732
bigWig
1076
tsv
945
bed narrowPeak
534
bigBed narrowPeak
320
fastq
223
tagAlign
195
bed broadPeak
182
bed bed3+
167
bigBed broadPeak
157
txt
64
xls
22
bed bedMethyl
22
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
2718
Homo sapiens
Biosample type
2720
tissue
1040
primary cell
549
cell line
350
in vitro differentiated cells
8
stem cell
Organ
544
connective tissue
485
adipose tissue
475
pancreas
351
liver
313
heart
299
kidney
254
brain
158
bone element
133
blood vessel
133
vasculature
122
limb
80
musculature of body
73
artery
56
eye
43
nerve
24
spleen
20
lung
18
ureter
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2623
AMP
47
KPMP
31
T1D
19
LungMap
Genome assembly (visualization)
1817
GRCh38
1710
hg19
Lab
2368
AMP-T2D consortium
142
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
91
inconsistent ontology term
27
inconsistent control
9
audit script error
Audit category:
20
missing controlled_by
Audit category:
5
inconsistent control read length
files.read_length!
36
BIOSAMPLE
ASSAY
2720 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
DNase-seq
RNA microarray
snATAC-seq
WGBS
pCHi-C
Hi-C
small RNA-seq
RRBS
FAIRE-seq
MeRIP-seq
snDrop-seq
tissue
islet of Langerhans
292
53
68
6
1
7
4
3
1
1
4
adipose tissue
382
3
3
1
liver
167
139
20
1
3
1
1
1
kidney
49
27
75
64
13
6
1
1
1
bone element
84
+ See 176 more…
See all biosamples
Download