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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 45ChIP-seq
  • 9DNase-seq
  • 3RRBS
Assay category
  • 45DNA binding
  • 9DNA accessibility
  • 3DNA methylation
Target of assay
  • 28histone
  • 28histone modification
  • 17broad histone mark
  • 13control
  • 11narrow histone mark
  • 4transcription factor
  • 2RNA binding protein
Date released
  • 30August, 2017
  • 9November, 2018
  • 9October, 2017
  • 6September, 2017
  • 3December, 2017
Available data
  • 57fastq
  • 53bam
  • 40bigWig
  • 39bed narrowPeak
  • 27bigBed narrowPeak
  • 23bed bed3+
  • 18bed broadPeak
  • 15tagAlign
  • 9bigBed broadPeak
  • 3bed bedMethyl
  • 3bigBed bedMethyl
Organism
  • 50Homo sapiens
Biosample type
  • 113cell line
  • 57tissue
  • 48primary cell
  • 44in vitro differentiated cells
  • 2stem cell
Organ
  • 30pancreas
  • 11brain
  • 10liver
  • 3adipose tissue
  • 3connective tissue
  • 2musculature of body
  • 1spleen
Project
  • 57AMP
Genome assembly (visualization)
  • 45hg19
  • 42GRCh38
Lab
  • 57AMP-T2D consortium
Audit category:
  • 6missing controlled_by
Audit category:
  • 1inconsistent assembly
  • 1inconsistent control read length
BIOSAMPLE
ASSAY

57 results

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Clear Filters
ChIP-seq
DNase-seq
RRBS
tissue
islet of Langerhans18
brain92
pancreas10
liver621
adipose tissue2
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