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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 54ChIP-seq
  • 2ATAC-seq
  • 1FAIRE-seq
Assay category
  • 54DNA binding
  • 3DNA accessibility
Target of assay
  • 34transcription factor
  • 11control
  • 9histone
  • 9histone modification
  • 7broad histone mark
  • 2chromatin remodeller
  • 2narrow histone mark
Date released
  • 35December, 2017
  • 15August, 2017
  • 5November, 2018
  • 1March, 2019
  • 1October, 2017
Available data
  • 57bam
  • 57fastq
  • 45bigWig
  • 42bed narrowPeak
  • 40bigBed narrowPeak
  • 2bed bed3+
  • 1bed broadPeak
Organism
  • 57Homo sapiens
Biosample type
  • 64cell line
  • 64primary cell
  • 57tissue
  • 18in vitro differentiated cells
  • 3stem cell
Organ
  • 46liver
  • 8pancreas
  • 2adipose tissue
  • 2connective tissue
  • 1brain
Project
  • 57AMP
Genome assembly (visualization)
  • 44GRCh38
  • 44hg19
Lab
  • 56AMP-T2D consortium
  • 1Mark McCarthy, Oxford
Audit category:
  • 27inconsistent control
Audit category:
  • 2missing controlled_by
Audit category:
  • 4inconsistent control read length
BIOSAMPLE
ASSAY

57 results

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ChIP-seq
ATAC-seq
FAIRE-seq
tissue
liver46
pancreas41
islet of Langerhans21
white adipose tissue2
cerebellum (Hemisphere)1
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