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Schema
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
934
total RNA-seq
842
ChIP-seq
232
ATAC-seq
180
single cell RNA-seq
170
DNase-seq
87
RNA microarray
28
snATAC-seq
25
pCHi-C
23
WGBS
16
Hi-C
16
small RNA-seq
11
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
Assay category
1130
Transcription
842
DNA binding
434
DNA accessibility
34
DNA methylation
16
3D chromatin structure
Target of assay
620
histone
620
histone modification
320
narrow histone mark
300
broad histone mark
152
control
72
transcription factor
18
RNA binding protein
2
chromatin remodeller
2
nucleotide modification
Date released
545
February, 2021
242
October, 2019
229
August, 2021
193
May, 2020
180
August, 2017
163
June, 2019
118
July, 2018
115
May, 2019
95
February, 2023
82
November, 2017
80
April, 2019
77
July, 2019
47
September, 2023
44
December, 2017
42
May, 2022
40
March, 2020
40
May, 2021
40
May, 2024
40
November, 2019
39
October, 2018
25
February, 2020
19
April, 2020
16
October, 2017
15
May, 2023
8
January, 2021
8
November, 2018
7
January, 2019
6
April, 2018
6
September, 2017
4
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
Available data
1706
bam
1630
bigWig
985
tsv
920
bed narrowPeak
530
bigBed narrowPeak
238
tagAlign
203
bed broadPeak
197
bed bed3+
175
fastq
168
bigBed broadPeak
151
txt
64
xls
21
bed bedMethyl
21
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
2566
Homo sapiens
Biosample type
2575
tissue
807
primary cell
558
cell line
392
in vitro differentiated cells
10
stem cell
Organ
522
connective tissue
463
adipose tissue
367
pancreas
340
liver
313
heart
299
kidney
264
brain
158
bone element
133
blood vessel
133
vasculature
122
limb
82
musculature of body
73
artery
56
eye
43
nerve
20
lung
18
ureter
16
skeleton
15
epithelium
8
spleen
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2478
AMP
47
KPMP
31
T1D
19
LungMap
Genome assembly (visualization)
1717
GRCh38
1599
hg19
Lab
2249
AMP-T2D consortium
142
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
28
Kyle Gaulton, UCSD
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
Audit category:
91
inconsistent ontology term
27
inconsistent control
9
audit script error
Audit category:
26
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
files.run_type!
paired-ended
BIOSAMPLE
ASSAY
2575 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
DNase-seq
RNA microarray
snATAC-seq
pCHi-C
WGBS
Hi-C
small RNA-seq
RRBS
FAIRE-seq
MeRIP-seq
snDrop-seq
tissue
adipose tissue
382
2
3
1
3
islet of Langerhans
195
71
48
6
1
7
4
3
1
1
4
liver
167
132
20
1
1
3
1
1
1
kidney
49
27
75
64
13
6
1
1
1
bone element
84
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