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Schema
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1031
total RNA-seq
752
ChIP-seq
259
ATAC-seq
176
DNase-seq
174
single cell RNA-seq
87
RNA microarray
28
snATAC-seq
25
pCHi-C
21
WGBS
16
Hi-C
16
small RNA-seq
8
RRBS
4
MeRIP-seq
3
snDrop-seq
2
FAIRE-seq
Assay category
1221
Transcription
752
DNA binding
465
DNA accessibility
29
DNA methylation
16
3D chromatin structure
Target of assay
562
histone modification
561
histone
300
narrow histone mark
261
broad histone mark
155
control
37
transcription factor
23
RNA binding protein
3
other context
3
other post-translational modification
2
nucleotide modification
Date released
545
February, 2021
242
October, 2019
229
August, 2021
213
August, 2017
193
May, 2020
163
June, 2019
120
July, 2018
115
May, 2019
95
February, 2023
82
November, 2017
80
April, 2019
77
July, 2019
66
May, 2022
51
October, 2018
47
September, 2023
40
March, 2020
40
May, 2021
40
May, 2024
40
November, 2019
25
February, 2020
19
April, 2020
18
November, 2018
15
May, 2023
13
October, 2017
8
January, 2021
7
December, 2018
5
March, 2019
4
December, 2017
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
Available data
1738
bam
1635
bigWig
1070
tsv
879
bed narrowPeak
471
bigBed narrowPeak
223
tagAlign
203
bed broadPeak
202
fastq
176
bed bed3+
175
bigBed broadPeak
157
txt
64
xls
18
bed bedMethyl
18
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
2600
Homo sapiens
Biosample type
2602
tissue
804
primary cell
338
cell line
255
in vitro differentiated cells
6
stem cell
Organ
529
connective tissue
470
adipose tissue
430
pancreas
313
heart
299
kidney
299
liver
254
brain
158
bone element
133
blood vessel
133
vasculature
122
limb
80
musculature of body
73
artery
56
eye
43
nerve
20
lung
18
spleen
18
ureter
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2505
AMP
47
KPMP
31
T1D
19
LungMap
Genome assembly (visualization)
1721
GRCh38
1617
hg19
Lab
2250
AMP-T2D consortium
142
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
91
inconsistent ontology term
9
audit script error
files.run_type!
single-ended
BIOSAMPLE
ASSAY
2602 results
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total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
single cell RNA-seq
RNA microarray
snATAC-seq
pCHi-C
WGBS
Hi-C
small RNA-seq
RRBS
MeRIP-seq
snDrop-seq
FAIRE-seq
tissue
islet of Langerhans
292
43
68
7
4
3
1
4
adipose tissue
382
3
1
liver
167
91
20
2
1
1
2
1
1
kidney
49
27
75
13
64
6
1
1
1
bone element
84
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