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Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
97
total RNA-seq
65
ChIP-seq
28
ATAC-seq
8
DNase-seq
4
WGBS
Assay category
97
Transcription
65
DNA binding
36
DNA accessibility
4
DNA methylation
Target of assay
35
control
22
transcription factor
10
RNA binding protein
8
histone modification
7
histone
4
narrow histone mark
3
broad histone mark
3
other context
3
other post-translational modification
Date released
104
August, 2017
35
October, 2018
24
May, 2022
18
November, 2018
7
December, 2018
7
October, 2017
4
December, 2017
2
July, 2018
1
March, 2019
Available data
202
fastq
201
bam
142
bigWig
91
tsv
64
bed narrowPeak
31
bigBed narrowPeak
10
bed broadPeak
8
bed bed3+
8
bigBed broadPeak
6
txt
4
bed bedMethyl
4
bigBed bedMethyl
Organism
202
Homo sapiens
Biosample type
281
primary cell
202
tissue
104
cell line
2
in vitro differentiated cells
Organ
138
pancreas
25
adipose tissue
25
connective tissue
21
liver
17
spleen
1
brain
Project
202
AMP
Genome assembly (visualization)
156
hg19
142
GRCh38
Lab
176
AMP-T2D consortium
24
Kyle Gaulton, UCSD
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
BIOSAMPLE
ASSAY
202 results
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total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
WGBS
tissue
islet of Langerhans
97
20
body of pancreas
13
4
2
2
spleen
13
1
1
2
liver
13
2
subcutaneous adipose tissue
12
1
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