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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 97total RNA-seq
  • 65ChIP-seq
  • 28ATAC-seq
  • 8DNase-seq
  • 4WGBS
Assay category
  • 97Transcription
  • 65DNA binding
  • 36DNA accessibility
  • 4DNA methylation
Target of assay
  • 35control
  • 22transcription factor
  • 10RNA binding protein
  • 8histone modification
  • 7histone
  • 4narrow histone mark
  • 3broad histone mark
  • 3other context
  • 3other post-translational modification
Date released
  • 104August, 2017
  • 35October, 2018
  • 24May, 2022
  • 18November, 2018
  • 7December, 2018
  • 7October, 2017
  • 4December, 2017
  • 2July, 2018
  • 1March, 2019
Available data
  • 202fastq
  • 201bam
  • 142bigWig
  • 91tsv
  • 64bed narrowPeak
  • 31bigBed narrowPeak
  • 10bed broadPeak
  • 8bed bed3+
  • 8bigBed broadPeak
  • 6txt
  • 4bed bedMethyl
  • 4bigBed bedMethyl
Organism
  • 202Homo sapiens
Biosample type
  • 281primary cell
  • 202tissue
  • 104cell line
  • 2in vitro differentiated cells
Organ
  • 138pancreas
  • 25adipose tissue
  • 25connective tissue
  • 21liver
  • 17spleen
  • 1brain
Project
  • 202AMP
Genome assembly (visualization)
  • 156hg19
  • 142GRCh38
Lab
  • 176AMP-T2D consortium
  • 24Kyle Gaulton, UCSD
  • 1Mark McCarthy, Oxford
  • 1Stephen Parker, UMich
BIOSAMPLE
ASSAY

202 results

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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
WGBS
tissue
islet of Langerhans9720
body of pancreas13422
spleen13112
liver132
subcutaneous adipose tissue121
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