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Schema
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
155
ChIP-seq
6
WGBS
6
single cell RNA-seq
3
RRBS
2
DNase-seq
2
FAIRE-seq
1
ATAC-seq
Assay category
155
DNA binding
9
DNA methylation
6
Transcription
5
DNA accessibility
Target of assay
66
histone
66
histone modification
57
transcription factor
42
broad histone mark
32
control
24
narrow histone mark
5
RNA binding protein
2
chromatin remodeller
Date released
71
August, 2017
44
December, 2017
23
October, 2018
10
October, 2017
8
November, 2018
7
January, 2019
6
April, 2018
6
September, 2017
Available data
175
fastq
169
bam
137
bigWig
105
bed narrowPeak
90
bigBed narrowPeak
29
bed bed3+
15
tagAlign
10
bed broadPeak
7
bed bedMethyl
7
bigBed bedMethyl
6
tsv
1
bigBed broadPeak
Organism
168
Homo sapiens
Biosample type
324
cell line
284
primary cell
175
tissue
139
in vitro differentiated cells
4
stem cell
Organ
75
pancreas
62
liver
18
adipose tissue
18
connective tissue
11
brain
7
spleen
2
musculature of body
Project
175
AMP
Genome assembly (visualization)
138
GRCh38
138
hg19
Lab
175
AMP-T2D consortium
Audit category:
27
inconsistent control
Audit category:
26
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
BIOSAMPLE
ASSAY
175 results
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ChIP-seq
WGBS
single cell RNA-seq
RRBS
DNase-seq
FAIRE-seq
ATAC-seq
tissue
liver
54
1
1
islet of Langerhans
28
6
1
1
body of pancreas
20
pancreas
16
2
1
white adipose tissue
12
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