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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
941
total RNA-seq
457
ChIP-seq
257
ATAC-seq
180
single cell RNA-seq
176
DNase-seq
87
RNA microarray
28
snATAC-seq
25
pCHi-C
18
WGBS
16
small RNA-seq
14
Hi-C
6
RRBS
4
MeRIP-seq
3
FAIRE-seq
3
snDrop-seq
Assay category
1137
Transcription
464
DNA accessibility
457
DNA binding
24
DNA methylation
14
3D chromatin structure
Target of assay
504
histone
504
histone modification
narrow histone mark
230
broad histone mark
158
control
71
transcription factor
26
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
545
February, 2021
August, 2017
227
August, 2021
166
May, 2020
163
June, 2019
120
July, 2018
113
October, 2019
95
February, 2023
82
May, 2019
77
July, 2019
66
May, 2022
63
October, 2018
57
April, 2019
54
November, 2017
47
September, 2023
46
December, 2017
40
May, 2021
40
November, 2019
38
March, 2020
26
November, 2018
25
February, 2020
25
May, 2024
21
October, 2017
19
April, 2020
15
May, 2023
8
January, 2021
7
December, 2018
6
April, 2018
6
September, 2017
5
January, 2019
4
November, 2020
3
December, 2019
3
March, 2019
2
January, 2018
1
August, 2022
Available data
1512
bam
1352
bigWig
986
tsv
676
bed narrowPeak
437
bigBed narrowPeak
192
fastq
182
bed broadPeak
179
bed bed3+
176
bigBed broadPeak
157
txt
89
tagAlign
64
xls
20
bed bedMethyl
20
bigBed bedMethyl
10
hic
9
bedpe bed3+
6
csv
5
bed bed3
Organism
2213
Homo sapiens
Biosample type
2215
tissue
936
primary cell
611
cell line
287
in vitro differentiated cells
9
stem cell
Organ
489
connective tissue
431
adipose tissue
340
pancreas
289
kidney
276
liver
275
heart
158
bone element
151
brain
115
blood vessel
115
vasculature
107
limb
67
artery
54
eye
54
musculature of body
35
nerve
23
spleen
20
lung
18
ureter
16
skeleton
15
epithelium
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
ovary
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2120
AMP
47
KPMP
29
T1D
19
LungMap
Genome assembly (visualization)
1467
GRCh38
1360
hg19
Lab
1882
AMP-T2D consortium
142
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
25
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
89
inconsistent ontology term
27
inconsistent control
9
audit script error
Audit category:
3
missing controlled_by
lab.title!
Bing Ren, UCSD
month_released!
August, 2017
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
2215 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
DNase-seq
RNA microarray
snATAC-seq
pCHi-C
WGBS
small RNA-seq
Hi-C
RRBS
MeRIP-seq
FAIRE-seq
snDrop-seq
tissue
adipose tissue
382
3
1
islet of Langerhans
202
6
67
6
7
4
1
1
4
liver
167
68
20
1
2
1
1
1
kidney
49
17
75
64
13
6
1
1
1
bone element
84
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