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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
522
ChIP-seq
455
total RNA-seq
253
ATAC-seq
180
single cell RNA-seq
176
DNase-seq
86
RNA microarray
28
snATAC-seq
24
pCHi-C
21
WGBS
14
Hi-C
14
small RNA-seq
11
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
Assay category
649
Transcription
522
DNA binding
461
DNA accessibility
32
DNA methylation
14
3D chromatin structure
Target of assay
595
histone modification
594
histone
narrow histone mark
283
broad histone mark
163
control
77
transcription factor
23
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
226
August, 2021
189
August, 2017
166
May, 2020
162
June, 2019
July, 2018
112
October, 2019
101
February, 2021
94
February, 2023
82
May, 2019
67
July, 2019
66
May, 2022
57
April, 2019
54
November, 2017
47
September, 2023
46
December, 2017
40
May, 2021
40
October, 2018
39
November, 2019
37
March, 2020
25
May, 2024
25
November, 2018
23
February, 2020
20
October, 2017
19
April, 2020
14
May, 2023
8
January, 2021
7
December, 2018
6
April, 2018
6
September, 2017
5
January, 2019
4
November, 2020
3
December, 2019
3
March, 2019
1
August, 2022
1
January, 2018
Available data
1051
bam
909
bigWig
707
bed narrowPeak
502
tsv
444
bigBed narrowPeak
305
fastq
196
bed broadPeak
193
bed bed3+
174
bigBed broadPeak
157
txt
123
tagAlign
64
xls
23
bed bedMethyl
23
bigBed bedMethyl
10
hic
9
bedpe bed3+
6
csv
5
bed bed3
Organism
1789
Homo sapiens
Biosample type
1795
tissue
892
primary cell
611
cell line
258
in vitro differentiated cells
8
stem cell
Organ
connective tissue
476
adipose tissue
349
pancreas
317
liver
289
kidney
275
heart
158
bone element
151
brain
115
blood vessel
115
vasculature
107
limb
73
musculature of body
67
artery
54
eye
35
nerve
23
spleen
20
lung
18
ureter
16
skeleton
15
epithelium
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
ovary
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
1700
AMP
47
KPMP
29
T1D
19
LungMap
Genome assembly (visualization)
1012
GRCh38
918
hg19
Lab
1462
AMP-T2D consortium
142
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
25
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
88
inconsistent ontology term
27
inconsistent control
9
audit script error
Audit category:
10
missing controlled_by
Audit category:
3
inconsistent control read length
1
inconsistent assembly
lab.title!
Bing Ren, UCSD
month_released!
July, 2018
organ_slims!
connective tissue
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
1795 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
DNase-seq
RNA microarray
snATAC-seq
pCHi-C
WGBS
Hi-C
small RNA-seq
RRBS
FAIRE-seq
MeRIP-seq
snDrop-seq
tissue
liver
103
167
20
1
2
1
3
1
1
1
islet of Langerhans
34
171
67
6
1
7
4
1
1
1
4
kidney
17
49
75
64
13
6
1
1
1
bone element
84
heart left ventricle
26
3
2
18
3
1
4
1
1
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