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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
826
ChIP-seq
507
total RNA-seq
176
DNase-seq
169
single cell RNA-seq
159
ATAC-seq
86
RNA microarray
24
pCHi-C
22
snATAC-seq
21
WGBS
15
Hi-C
14
small RNA-seq
11
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
Assay category
826
DNA binding
690
Transcription
361
DNA accessibility
32
DNA methylation
15
3D chromatin structure
Target of assay
595
histone modification
594
histone
311
narrow histone mark
283
broad histone mark
159
control
74
transcription factor
23
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
240
October, 2019
227
August, 2017
193
May, 2020
162
June, 2019
120
July, 2018
115
May, 2019
101
February, 2021
100
August, 2021
94
February, 2023
82
November, 2017
80
April, 2019
67
July, 2019
51
October, 2018
48
December, 2017
47
September, 2023
40
May, 2021
40
May, 2024
39
March, 2020
39
November, 2019
26
May, 2022
25
November, 2018
23
February, 2020
22
October, 2017
19
April, 2020
8
January, 2021
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
3
December, 2019
1
August, 2022
1
January, 2018
Available data
1402
bam
1268
bigWig
884
bed narrowPeak
619
tsv
548
bigBed narrowPeak
327
fastq
230
tagAlign
210
bed broadPeak
199
bed bed3+
174
bigBed broadPeak
100
txt
23
bed bedMethyl
23
bigBed bedMethyl
10
bedpe bed3+
10
hic
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
2033
Homo sapiens
Biosample type
2041
tissue
1049
primary cell
634
cell line
297
in vitro differentiated cells
9
stem cell
Organ
connective tissue
505
pancreas
488
adipose tissue
321
liver
313
heart
265
brain
158
bone element
157
kidney
133
blood vessel
133
vasculature
122
limb
82
musculature of body
73
artery
56
eye
43
nerve
20
lung
18
spleen
18
ureter
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
1944
AMP
47
KPMP
31
T1D
19
LungMap
Genome assembly (visualization)
1301
GRCh38
1249
hg19
Lab
1871
AMP-T2D consortium
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
90
inconsistent ontology term
27
inconsistent control
9
audit script error
Audit category:
14
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
lab.title!
Karen Mohlke, UNC
Katalin Susztak, Upenn
month_released!
December, 2018
organ_slims!
connective tissue
BIOSAMPLE
ASSAY
2041 results
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Clear Filters
ChIP-seq
total RNA-seq
DNase-seq
single cell RNA-seq
ATAC-seq
RNA microarray
pCHi-C
snATAC-seq
WGBS
Hi-C
small RNA-seq
RRBS
FAIRE-seq
MeRIP-seq
snDrop-seq
tissue
islet of Langerhans
70
292
1
6
68
4
7
3
1
1
4
liver
145
147
2
1
1
3
1
1
1
kidney
27
13
53
1
1
bone element
84
heart left ventricle
35
3
3
18
2
1
4
1
1
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