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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
817
total RNA-seq
647
ChIP-seq
174
DNase-seq
169
single cell RNA-seq
161
ATAC-seq
87
RNA microarray
27
WGBS
22
snATAC-seq
21
pCHi-C
16
small RNA-seq
14
Hi-C
11
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
Assay category
1002
Transcription
647
DNA binding
361
DNA accessibility
38
DNA methylation
14
3D chromatin structure
Target of assay
421
histone modification
420
histone
254
broad histone mark
166
narrow histone mark
134
control
94
transcription factor
28
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
545
February, 2021
284
August, 2017
October, 2019
May, 2020
163
June, 2019
120
July, 2018
115
May, 2019
101
August, 2021
95
February, 2023
82
November, 2017
80
April, 2019
77
July, 2019
74
October, 2018
66
May, 2022
48
December, 2017
47
September, 2023
40
March, 2020
40
May, 2021
40
May, 2024
40
November, 2019
26
November, 2018
25
February, 2020
October, 2017
19
April, 2020
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
1
May, 2023
Available data
1513
bam
1428
bigWig
925
tsv
730
bed narrowPeak
508
bigBed narrowPeak
360
fastq
205
bed broadPeak
201
bed bed3+
172
bigBed broadPeak
125
tagAlign
100
txt
25
bed bedMethyl
25
bigBed bedMethyl
9
bedpe bed3+
9
hic
6
csv
5
bed bed3
1
bedpe
Organism
2168
Homo sapiens
Biosample type
2177
tissue
907
primary cell
631
cell line
386
in vitro differentiated cells
10
stem cell
Organ
544
connective tissue
497
pancreas
486
adipose tissue
305
heart
163
brain
162
liver
158
bone element
153
kidney
107
blood vessel
107
vasculature
82
musculature of body
53
limb
47
artery
35
eye
24
spleen
20
lung
18
ureter
16
skeleton
15
epithelium
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
nerve
1
ovary
1
pericardium
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2080
AMP
47
KPMP
31
T1D
19
LungMap
Genome assembly (visualization)
1447
GRCh38
1408
hg19
Lab
1968
AMP-T2D consortium
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
Audit category:
89
inconsistent ontology term
27
inconsistent control
9
audit script error
Audit category:
22
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
lab.title!
Katalin Susztak, Upenn
month_released!
May, 2020
October, 2017
October, 2019
BIOSAMPLE
ASSAY
2177 results
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Clear Filters
total RNA-seq
ChIP-seq
DNase-seq
single cell RNA-seq
ATAC-seq
RNA microarray
WGBS
snATAC-seq
pCHi-C
small RNA-seq
Hi-C
RRBS
FAIRE-seq
MeRIP-seq
snDrop-seq
tissue
islet of Langerhans
278
50
1
6
54
7
3
1
1
4
adipose tissue
382
2
2
3
1
liver
23
90
2
1
20
3
1
1
1
1
kidney
23
13
53
1
1
bone element
84
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