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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
527
total RNA-seq
238
ChIP-seq
179
ATAC-seq
176
DNase-seq
169
single cell RNA-seq
86
RNA microarray
23
pCHi-C
22
snATAC-seq
21
WGBS
15
Hi-C
14
small RNA-seq
11
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
Assay category
710
Transcription
381
DNA accessibility
238
DNA binding
32
DNA methylation
15
3D chromatin structure
Target of assay
histone modification
590
histone
307
narrow histone mark
283
broad histone mark
163
control
77
transcription factor
23
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
166
May, 2020
162
June, 2019
135
August, 2017
120
July, 2018
101
February, 2021
100
August, 2021
94
February, 2023
73
October, 2019
67
July, 2019
66
May, 2022
47
September, 2023
43
December, 2017
40
May, 2021
39
November, 2019
36
March, 2020
26
May, 2019
25
November, 2018
23
February, 2020
21
October, 2018
20
April, 2019
19
April, 2020
12
November, 2017
10
October, 2017
8
January, 2021
7
December, 2018
6
April, 2018
6
September, 2017
5
March, 2019
5
May, 2024
4
November, 2020
3
December, 2019
1
August, 2022
1
January, 2018
1
January, 2019
Available data
944
bam
771
bigWig
618
tsv
389
bed narrowPeak
261
fastq
240
bigBed narrowPeak
187
bed bed3+
176
bed broadPeak
174
bigBed broadPeak
100
txt
51
tagAlign
23
bed bedMethyl
23
bigBed bedMethyl
10
bedpe bed3+
10
hic
6
csv
5
bed bed3
1
bedpe
Organism
1490
Homo sapiens
Biosample type
1492
tissue
820
primary cell
624
cell line
222
in vitro differentiated cells
7
stem cell
Organ
connective tissue
456
adipose tissue
432
pancreas
291
liver
218
heart
158
bone element
137
kidney
81
brain
79
blood vessel
79
vasculature
73
limb
57
musculature of body
54
eye
53
artery
20
lung
19
nerve
19
spleen
18
ureter
16
skeleton
15
epithelium
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
ovary
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
1397
AMP
47
KPMP
29
T1D
19
LungMap
Genome assembly (visualization)
836
hg19
811
GRCh38
Lab
1317
AMP-T2D consortium
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
19
Xin Sun, UCSD
5
Patrick T. Ellinor, Broad
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
88
inconsistent ontology term
27
inconsistent control
9
audit script error
Audit category:
6
missing controlled_by
lab.title!
Katalin Susztak, Upenn
organ_slims!
connective tissue
ovary
target.investigated_as!
histone modification
BIOSAMPLE
ASSAY
1492 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
single cell RNA-seq
RNA microarray
pCHi-C
snATAC-seq
WGBS
Hi-C
small RNA-seq
RRBS
FAIRE-seq
MeRIP-seq
snDrop-seq
tissue
islet of Langerhans
292
20
68
1
6
4
7
3
1
1
4
liver
167
80
20
2
1
1
3
1
1
1
bone element
84
kidney
7
13
53
1
1
heart left ventricle
3
11
2
3
18
1
4
1
1
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