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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
859
total RNA-seq
202
ATAC-seq
186
ChIP-seq
177
single cell RNA-seq
170
DNase-seq
87
RNA microarray
28
snATAC-seq
24
pCHi-C
23
WGBS
15
Hi-C
13
small RNA-seq
10
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
Assay category
1049
Transcription
404
DNA accessibility
186
DNA binding
33
DNA methylation
15
3D chromatin structure
Target of assay
538
histone
histone modification
274
narrow histone mark
264
broad histone mark
134
control
54
transcription factor
25
RNA binding protein
3
other context
3
other post-translational modification
2
nucleotide modification
Date released
544
February, 2021
227
August, 2021
161
June, 2019
139
August, 2017
120
July, 2018
68
July, 2019
65
October, 2019
60
February, 2023
47
September, 2023
44
October, 2018
40
May, 2021
40
November, 2019
35
March, 2020
26
May, 2022
23
May, 2019
22
February, 2020
20
April, 2019
19
April, 2020
19
November, 2018
15
May, 2023
12
November, 2017
11
October, 2017
8
January, 2021
7
December, 2018
6
April, 2018
6
September, 2017
5
March, 2019
5
May, 2024
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
1
January, 2019
Available data
1189
bam
1028
bigWig
918
tsv
359
bed narrowPeak
238
fastq
205
bigBed narrowPeak
183
bed bed3+
171
bed broadPeak
169
bigBed broadPeak
157
txt
64
xls
26
tagAlign
24
bed bedMethyl
24
bigBed bedMethyl
10
hic
9
bedpe bed3+
5
bed bed3
5
csv
1
bedpe
Organism
1802
Homo sapiens
Biosample type
1805
tissue
514
primary cell
279
in vitro differentiated cells
175
cell line
8
stem cell
Organ
514
connective tissue
456
adipose tissue
432
pancreas
liver
279
kidney
218
heart
158
bone element
81
brain
79
blood vessel
79
vasculature
73
limb
57
musculature of body
54
eye
artery
20
lung
19
nerve
19
spleen
18
ureter
16
skeleton
15
epithelium
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
ovary
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
1710
AMP
47
KPMP
29
T1D
19
LungMap
Genome assembly (visualization)
1127
GRCh38
1092
hg19
Lab
1528
AMP-T2D consortium
142
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
19
Xin Sun, UCSD
5
Patrick T. Ellinor, Broad
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
89
inconsistent ontology term
9
audit script error
Audit category:
18
missing controlled_by
lab.title!
Klaus Kaestner, Upenn
organ_slims!
artery
liver
target.investigated_as!
histone modification
BIOSAMPLE
ASSAY
1805 results
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Clear Filters
total RNA-seq
ATAC-seq
ChIP-seq
single cell RNA-seq
DNase-seq
RNA microarray
snATAC-seq
pCHi-C
WGBS
Hi-C
small RNA-seq
RRBS
FAIRE-seq
MeRIP-seq
snDrop-seq
tissue
islet of Langerhans
292
68
20
6
1
7
4
3
1
1
4
adipose tissue
382
3
1
1
3
kidney
49
75
7
64
13
6
1
1
1
bone element
84
bone tissue
58
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