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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1017
total RNA-seq
879
ChIP-seq
194
ATAC-seq
178
single cell RNA-seq
174
DNase-seq
87
RNA microarray
27
WGBS
24
pCHi-C
18
snATAC-seq
16
Hi-C
16
small RNA-seq
10
RRBS
4
FAIRE-seq
3
snDrop-seq
Assay category
1211
Transcription
879
DNA binding
390
DNA accessibility
37
DNA methylation
16
3D chromatin structure
Target of assay
608
histone modification
607
histone
318
narrow histone mark
289
broad histone mark
178
control
93
transcription factor
27
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
545
February, 2021
284
August, 2017
227
August, 2021
216
October, 2019
193
May, 2020
161
June, 2019
120
July, 2018
110
May, 2019
82
November, 2017
80
April, 2019
75
July, 2019
74
October, 2018
48
December, 2017
47
September, 2023
42
February, 2023
42
May, 2022
40
March, 2020
40
May, 2024
40
November, 2019
38
May, 2021
26
November, 2018
23
February, 2020
23
October, 2017
19
April, 2020
15
May, 2023
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
5
March, 2019
3
December, 2019
2
January, 2018
1
August, 2022
Available data
1849
bam
1745
bigWig
1072
tsv
904
bed narrowPeak
536
bigBed narrowPeak
353
fastq
238
tagAlign
209
bed broadPeak
201
bed bed3+
172
bigBed broadPeak
151
txt
64
xls
24
bed bedMethyl
24
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
2638
Homo sapiens
Biosample type
2647
tissue
846
primary cell
585
cell line
347
in vitro differentiated cells
10
stem cell
Organ
547
connective tissue
488
adipose tissue
450
pancreas
361
liver
313
heart
299
kidney
265
brain
158
bone element
133
blood vessel
133
vasculature
122
limb
82
musculature of body
artery
56
eye
43
nerve
25
spleen
20
lung
18
ureter
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
thymus
1
urinary bladder
Project
2577
AMP
47
KPMP
19
LungMap
4
T1D
Genome assembly (visualization)
1797
GRCh38
1709
hg19
Lab
2351
AMP-T2D consortium
142
Katalin Susztak, Upenn
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
4
Bing Ren, UCSD
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
91
inconsistent ontology term
27
inconsistent control
9
audit script error
Audit category:
26
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
lab.title!
Kyle Gaulton, UCSD
Rohit N. Kulkarni, M.D., Ph.D.
organ_slims!
artery
pericardium
BIOSAMPLE
ASSAY
2647 results
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total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
DNase-seq
RNA microarray
WGBS
pCHi-C
snATAC-seq
Hi-C
small RNA-seq
RRBS
FAIRE-seq
snDrop-seq
tissue
islet of Langerhans
281
71
39
6
1
4
1
3
1
1
adipose tissue
382
2
3
3
1
liver
167
145
20
1
2
3
1
1
1
1
kidney
49
27
75
64
13
6
1
1
1
bone element
84
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