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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1018
total RNA-seq
792
ChIP-seq
231
ATAC-seq
180
single cell RNA-seq
178
DNase-seq
87
RNA microarray
27
WGBS
23
pCHi-C
18
snATAC-seq
16
Hi-C
16
small RNA-seq
11
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
Assay category
1214
Transcription
792
DNA binding
431
DNA accessibility
38
DNA methylation
16
3D chromatin structure
Target of assay
539
histone modification
538
histone
291
narrow histone mark
247
broad histone mark
165
control
90
transcription factor
24
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
545
February, 2021
284
August, 2017
242
October, 2019
229
August, 2021
193
May, 2020
163
June, 2019
120
July, 2018
May, 2019
82
November, 2017
80
April, 2019
77
February, 2023
77
July, 2019
74
October, 2018
48
December, 2017
47
September, 2023
42
May, 2022
40
May, 2024
40
November, 2019
39
March, 2020
38
May, 2021
26
November, 2018
24
February, 2020
23
October, 2017
19
April, 2020
15
May, 2023
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
Available data
1768
bam
1679
bigWig
1074
tsv
873
bed narrowPeak
468
bigBed narrowPeak
353
fastq
238
tagAlign
213
bed broadPeak
205
bed bed3+
176
bigBed broadPeak
151
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
2599
Homo sapiens
Biosample type
2608
tissue
844
primary cell
657
cell line
347
in vitro differentiated cells
10
stem cell
Organ
547
connective tissue
488
adipose tissue
452
pancreas
361
liver
299
kidney
292
heart
237
brain
158
bone element
115
limb
83
blood vessel
83
vasculature
75
musculature of body
68
artery
56
eye
43
nerve
25
spleen
20
lung
18
ureter
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
spinal cord
stomach
1
thymus
1
urinary bladder
Project
2538
AMP
47
KPMP
19
LungMap
4
T1D
Genome assembly (visualization)
1767
GRCh38
1644
hg19
Lab
2308
AMP-T2D consortium
142
Katalin Susztak, Upenn
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
90
inconsistent ontology term
27
inconsistent control
9
audit script error
Audit category:
26
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
lab.title!
Kyle Gaulton, UCSD
month_released!
May, 2019
organ_slims!
spinal cord
stomach
BIOSAMPLE
ASSAY
2608 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
DNase-seq
RNA microarray
WGBS
pCHi-C
snATAC-seq
Hi-C
small RNA-seq
RRBS
FAIRE-seq
MeRIP-seq
snDrop-seq
tissue
islet of Langerhans
281
71
39
6
1
4
1
3
1
1
4
adipose tissue
382
2
3
3
1
liver
167
145
20
1
2
3
1
1
1
1
kidney
49
27
75
64
13
6
1
1
1
bone element
84
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