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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
751
ChIP-seq
560
total RNA-seq
213
ATAC-seq
180
single cell RNA-seq
176
DNase-seq
23
pCHi-C
21
WGBS
18
snATAC-seq
16
Hi-C
14
small RNA-seq
11
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
2
RNA microarray
Assay category
754
Transcription
751
DNA binding
411
DNA accessibility
32
DNA methylation
16
3D chromatin structure
Target of assay
525
histone modification
524
histone
283
narrow histone mark
241
broad histone mark
151
control
77
transcription factor
23
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
240
October, 2019
228
August, 2021
227
August, 2017
193
May, 2020
162
June, 2019
120
July, 2018
115
May, 2019
November, 2017
80
April, 2019
68
February, 2023
67
July, 2019
51
October, 2018
48
December, 2017
47
September, 2023
42
May, 2022
40
May, 2024
39
March, 2020
39
November, 2019
38
May, 2021
25
November, 2018
23
February, 2020
22
October, 2017
19
April, 2020
14
May, 2023
9
February, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
3
December, 2019
1
August, 2022
1
January, 2018
Available data
1308
bam
1234
bigWig
887
bed narrowPeak
619
tsv
494
bigBed narrowPeak
310
fastq
204
bed broadPeak
199
bed bed3+
174
bigBed broadPeak
164
tagAlign
64
xls
63
txt
23
bed bedMethyl
23
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
1
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
1988
Homo sapiens
Biosample type
1996
tissue
802
primary cell
342
cell line
250
in vitro differentiated cells
9
stem cell
Organ
connective tissue
488
adipose tissue
454
pancreas
361
liver
313
heart
299
kidney
183
brain
bone element
133
blood vessel
133
vasculature
122
limb
82
musculature of body
73
artery
56
eye
43
nerve
25
spleen
20
lung
18
ureter
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
thymus
1
urinary bladder
Project
1926
AMP
47
KPMP
19
LungMap
4
T1D
Genome assembly (visualization)
1314
GRCh38
1237
hg19
Lab
1696
AMP-T2D consortium
142
Katalin Susztak, Upenn
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
27
inconsistent control
9
audit script error
6
inconsistent ontology term
Audit category:
14
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
lab.title!
Kyle Gaulton, UCSD
month_released!
November, 2017
organ_slims!
bone element
connective tissue
BIOSAMPLE
ASSAY
1996 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
DNase-seq
pCHi-C
WGBS
snATAC-seq
Hi-C
small RNA-seq
RRBS
FAIRE-seq
MeRIP-seq
snDrop-seq
RNA microarray
tissue
islet of Langerhans
70
281
39
6
1
4
1
3
1
1
4
liver
145
167
20
1
2
1
3
1
1
1
kidney
27
49
75
64
13
6
1
1
1
heart left ventricle
35
3
2
18
3
1
4
1
1
left cardiac atrium
40
18
1
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