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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
950
total RNA-seq
824
ChIP-seq
181
ATAC-seq
174
single cell RNA-seq
164
DNase-seq
23
pCHi-C
19
WGBS
18
snATAC-seq
16
small RNA-seq
15
Hi-C
11
RRBS
4
MeRIP-seq
3
FAIRE-seq
3
RNA microarray
3
snDrop-seq
Assay category
1140
Transcription
824
DNA binding
366
DNA accessibility
30
DNA methylation
15
3D chromatin structure
Target of assay
574
histone modification
573
histone
306
narrow histone mark
267
broad histone mark
168
control
84
transcription factor
25
RNA binding protein
2
chromatin remodeller
2
nucleotide modification
Date released
395
February, 2021
284
August, 2017
223
August, 2021
216
October, 2019
193
May, 2020
160
June, 2019
120
July, 2018
82
November, 2017
80
April, 2019
74
October, 2018
70
July, 2019
65
May, 2019
48
December, 2017
47
September, 2023
42
May, 2022
40
May, 2024
40
November, 2019
38
May, 2021
37
March, 2020
34
February, 2023
November, 2018
23
October, 2017
22
February, 2020
19
April, 2020
15
May, 2023
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
Available data
1704
bam
1621
bigWig
1004
tsv
841
bed narrowPeak
482
bigBed narrowPeak
327
fastq
238
tagAlign
199
bed broadPeak
191
bed bed3+
162
bigBed broadPeak
64
xls
63
txt
18
bed bedMethyl
18
bigBed bedMethyl
10
hic
9
bedpe bed3+
6
csv
1
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
2399
Homo sapiens
Biosample type
2408
tissue
811
primary cell
530
cell line
347
in vitro differentiated cells
10
stem cell
Organ
546
connective tissue
487
adipose tissue
447
pancreas
354
liver
313
heart
299
kidney
263
brain
bone element
133
blood vessel
vasculature
122
limb
82
musculature of body
73
artery
56
eye
43
nerve
20
lung
18
ureter
16
skeleton
16
spleen
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
thymus
1
urinary bladder
Project
2338
AMP
47
KPMP
19
LungMap
4
T1D
Genome assembly (visualization)
1666
GRCh38
1580
hg19
Lab
2108
AMP-T2D consortium
142
Katalin Susztak, Upenn
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
27
inconsistent control
9
audit script error
7
inconsistent ontology term
Audit category:
26
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
lab.title!
Kyle Gaulton, UCSD
month_released!
November, 2018
organ_slims!
bone element
vasculature
BIOSAMPLE
ASSAY
2408 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
DNase-seq
pCHi-C
WGBS
snATAC-seq
small RNA-seq
Hi-C
RRBS
MeRIP-seq
FAIRE-seq
RNA microarray
snDrop-seq
tissue
islet of Langerhans
281
71
39
6
1
4
1
3
1
4
1
adipose tissue
382
2
3
1
3
liver
167
141
20
1
1
3
1
1
1
kidney
49
27
75
64
13
6
1
1
1
heart left ventricle
3
35
2
18
3
1
4
1
1
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