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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
834
ChIP-seq
584
total RNA-seq
190
ATAC-seq
176
DNase-seq
86
RNA microarray
74
single cell RNA-seq
24
pCHi-C
22
snATAC-seq
21
WGBS
14
Hi-C
14
small RNA-seq
11
RRBS
4
FAIRE-seq
3
snDrop-seq
Assay category
834
DNA binding
672
Transcription
392
DNA accessibility
32
DNA methylation
14
3D chromatin structure
Target of assay
596
histone modification
595
histone
312
narrow histone mark
283
broad histone mark
161
control
77
transcription factor
23
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
241
October, 2019
August, 2021
227
August, 2017
193
May, 2020
162
June, 2019
159
February, 2021
120
July, 2018
115
May, 2019
94
February, 2023
82
November, 2017
80
April, 2019
67
July, 2019
66
May, 2022
51
October, 2018
48
December, 2017
47
September, 2023
40
May, 2021
40
May, 2024
39
March, 2020
39
November, 2019
25
November, 2018
23
February, 2020
22
October, 2017
19
April, 2020
14
May, 2023
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
5
March, 2019
3
December, 2019
1
August, 2022
1
January, 2018
Available data
1467
bam
1349
bigWig
907
bed narrowPeak
578
tsv
551
bigBed narrowPeak
334
fastq
230
tagAlign
210
bed broadPeak
199
bed bed3+
174
bigBed broadPeak
100
txt
23
bed bedMethyl
23
bigBed bedMethyl
10
hic
9
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
2049
Homo sapiens
Biosample type
2057
tissue
1023
primary cell
612
cell line
351
in vitro differentiated cells
10
stem cell
Organ
546
connective tissue
499
pancreas
adipose tissue
361
liver
265
brain
221
heart
171
kidney
158
bone element
127
blood vessel
127
vasculature
122
limb
82
musculature of body
71
artery
56
eye
43
nerve
25
spleen
20
lung
18
ureter
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
1960
AMP
47
KPMP
31
T1D
19
LungMap
Genome assembly (visualization)
1373
GRCh38
1330
hg19
Lab
1839
AMP-T2D consortium
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
14
Katalin Susztak, Upenn
Rohit N. Kulkarni, M.D., Ph.D.
2
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
90
inconsistent ontology term
27
inconsistent control
9
audit script error
Audit category:
14
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
lab.title!
Rohit N. Kulkarni, M.D., Ph.D.
month_released!
August, 2021
September, 2020
organ_slims!
adipose tissue
BIOSAMPLE
ASSAY
2057 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
RNA microarray
single cell RNA-seq
pCHi-C
snATAC-seq
WGBS
Hi-C
small RNA-seq
RRBS
FAIRE-seq
snDrop-seq
tissue
islet of Langerhans
71
291
68
1
6
4
7
2
1
1
liver
145
167
20
2
1
1
3
1
1
1
kidney
27
11
13
56
1
1
bone element
84
bone tissue
58
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