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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
250
total RNA-seq
117
ChIP-seq
73
ATAC-seq
11
snATAC-seq
7
DNase-seq
6
single cell RNA-seq
4
Hi-C
4
MeRIP-seq
4
WGBS
2
FAIRE-seq
2
RRBS
2
small RNA-seq
1
pCHi-C
Assay category
258
Transcription
117
DNA binding
93
DNA accessibility
6
DNA methylation
4
3D chromatin structure
Target of assay
73
histone
73
histone modification
41
broad histone mark
32
narrow histone mark
29
control
17
transcription factor
8
RNA binding protein
2
nucleotide modification
Date released
147
August, 2017
120
July, 2018
51
October, 2018
39
November, 2019
May, 2021
26
February, 2023
24
May, 2022
9
March, 2020
8
February, 2021
8
January, 2021
7
November, 2018
6
April, 2018
6
July, 2019
6
September, 2017
5
March, 2019
4
June, 2019
4
November, 2020
4
October, 2017
3
October, 2019
2
August, 2021
2
May, 2019
1
August, 2022
1
February, 2020
Available data
401
bam
336
bigWig
239
tsv
212
fastq
131
bed narrowPeak
62
bigBed narrowPeak
27
bed bed3+
19
bed broadPeak
16
tagAlign
10
txt
6
bed bedMethyl
6
bigBed bedMethyl
6
bigBed broadPeak
4
bed bed3
3
bedpe bed3+
3
hic
1
bedpe
Organism
476
Homo sapiens
Biosample type
483
tissue
346
primary cell
71
cell line
Organ
547
connective tissue
488
adipose tissue
467
pancreas
361
liver
311
heart
299
kidney
265
brain
158
bone element
133
blood vessel
133
vasculature
122
limb
82
musculature of body
73
artery
56
eye
43
nerve
25
spleen
20
lung
18
ureter
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
thymus
1
urinary bladder
Project
453
AMP
30
T1D
Genome assembly (visualization)
388
hg19
357
GRCh38
Lab
422
AMP-T2D consortium
50
Kyle Gaulton, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
Stephen Parker, UMich
Audit category:
1
audit script error
Audit category:
10
missing controlled_by
Audit category:
5
inconsistent control read length
1
inconsistent assembly
lab.title!
Stephen Parker, UMich
month_released!
May, 2021
BIOSAMPLE
ASSAY
483 results
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total RNA-seq
ChIP-seq
ATAC-seq
snATAC-seq
DNase-seq
single cell RNA-seq
Hi-C
MeRIP-seq
WGBS
FAIRE-seq
RRBS
small RNA-seq
pCHi-C
tissue
islet of Langerhans
242
50
57
7
1
6
3
4
1
1
body of pancreas
3
35
4
4
2
2
pancreas
1
16
4
2
1
2
1
1
1
endocrine pancreas
16
acetabular part of hip bone
1
1
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