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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
275
ChIP-seq
63
DNase-seq
24
total RNA-seq
12
ATAC-seq
4
Hi-C
4
small RNA-seq
2
pCHi-C
1
FAIRE-seq
1
RRBS
1
WGBS
Assay category
275
DNA binding
76
DNA accessibility
28
Transcription
4
3D chromatin structure
2
DNA methylation
Target of assay
233
histone
233
histone modification
129
narrow histone mark
104
broad histone mark
42
control
Date released
155
October, 2019
82
November, 2017
57
June, 2019
35
May, 2019
16
July, 2019
16
October, 2017
15
February, 2020
6
February, 2021
2
March, 2020
2
November, 2018
1
February, 2023
Available data
340
bam
293
bigWig
284
bed narrowPeak
200
bigBed narrowPeak
118
tagAlign
72
bed broadPeak
63
bed bed3+
63
bigBed broadPeak
30
tsv
12
fastq
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
1
tagAlign bed3+
Organism
387
Homo sapiens
Biosample type
387
tissue
21
primary cell
Organ
547
connective tissue
504
pancreas
488
adipose tissue
361
liver
313
heart
299
kidney
265
brain
158
bone element
133
blood vessel
133
vasculature
122
limb
82
musculature of body
73
artery
56
eye
43
nerve
25
spleen
20
lung
18
ureter
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
387
AMP
Genome assembly (visualization)
299
GRCh38
239
hg19
Lab
387
AMP-T2D consortium
Audit category:
4
inconsistent ontology term
Audit category:
4
missing controlled_by
lab.title!
Stephen Parker, UMich
BIOSAMPLE
ASSAY
387 results
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ChIP-seq
DNase-seq
total RNA-seq
ATAC-seq
Hi-C
small RNA-seq
pCHi-C
FAIRE-seq
RRBS
WGBS
tissue
tibial nerve
35
2
5
1
brain
20
14
1
1
1
tibial artery
23
2
1
1
layer of hippocampus
23
muscle of leg
7
13
1
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