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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
43
ChIP-seq
34
DNase-seq
6
total RNA-seq
4
Hi-C
1
ATAC-seq
1
WGBS
Assay category
43
DNA binding
35
DNA accessibility
6
Transcription
4
3D chromatin structure
1
DNA methylation
Target of assay
31
histone
31
histone modification
20
broad histone mark
12
control
11
narrow histone mark
Date released
43
October, 2019
32
June, 2019
7
May, 2019
5
July, 2019
2
February, 2020
Available data
82
bam
70
bigWig
65
bed narrowPeak
64
bigBed narrowPeak
34
bed bed3+
34
bed broadPeak
34
bigBed broadPeak
6
tsv
1
bed bedMethyl
1
bigBed bedMethyl
Organism
89
Homo sapiens
Biosample type
89
tissue
Organ
547
connective tissue
504
pancreas
488
adipose tissue
361
liver
313
heart
299
kidney
265
brain
bone element
133
blood vessel
133
vasculature
122
limb
82
musculature of body
artery
56
eye
43
nerve
25
spleen
20
lung
18
ureter
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
89
AMP
Genome assembly (visualization)
69
GRCh38
69
hg19
Lab
89
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
lab.title!
Stephen Parker, UMich
organ_slims!
artery
bone element
BIOSAMPLE
ASSAY
89 results
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ChIP-seq
DNase-seq
total RNA-seq
Hi-C
ATAC-seq
WGBS
tissue
tibial nerve
35
2
5
1
muscle of leg
7
13
1
muscle of arm
17
gastrocnemius medialis
1
4
forelimb muscle
1
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