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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
13
ATAC-seq
8
total RNA-seq
2
ChIP-seq
2
snATAC-seq
1
Hi-C
1
pCHi-C
Assay category
15
DNA accessibility
8
Transcription
2
DNA binding
1
3D chromatin structure
Target of assay
2
histone
2
histone modification
2
narrow histone mark
Date released
147
August, 2017
120
July, 2018
51
October, 2018
39
November, 2019
37
May, 2021
24
May, 2022
18
February, 2023
9
March, 2020
8
January, 2021
7
November, 2018
6
April, 2018
6
July, 2019
6
September, 2017
5
March, 2019
5
October, 2017
4
June, 2019
4
November, 2020
3
October, 2019
2
August, 2021
2
May, 2019
1
August, 2022
1
February, 2020
Available data
5
bigWig
3
bam
3
tsv
2
bed narrowPeak
1
bedpe bed3+
1
hic
Organism
27
Homo sapiens
Biosample type
37
primary cell
27
tissue
6
cell line
Organ
43
heart
38
blood vessel
38
vasculature
35
artery
31
eye
27
pancreas
14
epithelium
8
bone element
8
skeleton
5
musculature of body
3
brain
3
liver
2
adipose tissue
2
connective tissue
2
intestine
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
lung
1
ovary
1
small intestine
1
spleen
1
stomach
1
thymus
1
urinary bladder
Project
22
T1D
5
AMP
Genome assembly (visualization)
6
hg19
3
GRCh38
Lab
18
Kyle Gaulton, UCSD
9
AMP-T2D consortium
lab.title!
Struan F.A. Grant, CHOP
BIOSAMPLE
ASSAY
27 results
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ATAC-seq
total RNA-seq
ChIP-seq
snATAC-seq
Hi-C
pCHi-C
tissue
islet of Langerhans
13
7
2
2
pancreas
1
1
1
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