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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
806
ChIP-seq
632
total RNA-seq
216
ATAC-seq
178
single cell RNA-seq
172
DNase-seq
86
RNA microarray
28
snATAC-seq
24
pCHi-C
21
WGBS
16
Hi-C
14
small RNA-seq
11
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
Assay category
824
Transcription
806
DNA binding
420
DNA accessibility
32
DNA methylation
16
3D chromatin structure
Target of assay
576
histone modification
575
histone
306
narrow histone mark
269
broad histone mark
156
control
76
transcription factor
22
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
227
August, 2017
226
August, 2021
214
October, 2019
193
May, 2020
160
June, 2019
159
February, 2021
120
July, 2018
110
May, 2019
82
November, 2017
80
April, 2019
66
July, 2019
66
May, 2022
59
February, 2023
51
October, 2018
48
December, 2017
47
September, 2023
40
May, 2021
40
May, 2024
39
March, 2020
39
November, 2019
25
November, 2018
22
October, 2017
21
February, 2020
19
April, 2020
14
May, 2023
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
3
December, 2019
1
August, 2022
1
January, 2018
Available data
1433
bam
1322
bigWig
909
bed narrowPeak
673
tsv
526
bigBed narrowPeak
334
fastq
230
tagAlign
206
bed broadPeak
195
bed bed3+
170
bigBed broadPeak
157
txt
64
xls
23
bed bedMethyl
23
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
2207
Homo sapiens
Biosample type
2215
tissue
1084
primary cell
596
cell line
386
in vitro differentiated cells
10
stem cell
Organ
547
connective tissue
505
pancreas
adipose tissue
361
liver
313
heart
299
kidney
265
brain
158
bone element
133
blood vessel
133
vasculature
122
limb
82
musculature of body
artery
56
eye
43
nerve
25
spleen
20
lung
18
ureter
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2118
AMP
47
KPMP
31
T1D
19
LungMap
Genome assembly (visualization)
1375
GRCh38
1304
hg19
Lab
1863
AMP-T2D consortium
142
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
90
inconsistent ontology term
27
inconsistent control
9
audit script error
Audit category:
14
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
lab.title!
Struan F.A. Grant, CHOP
organ_slims!
adipose tissue
artery
skin of body
BIOSAMPLE
ASSAY
2215 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
DNase-seq
RNA microarray
snATAC-seq
pCHi-C
WGBS
Hi-C
small RNA-seq
RRBS
FAIRE-seq
MeRIP-seq
snDrop-seq
tissue
islet of Langerhans
71
292
67
6
1
7
4
3
1
1
4
liver
145
167
20
1
2
1
3
1
1
1
kidney
27
49
75
64
13
6
1
1
1
bone element
84
heart left ventricle
35
3
2
18
3
1
4
1
1
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