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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
283
total RNA-seq
85
ChIP-seq
62
ATAC-seq
11
snATAC-seq
7
DNase-seq
6
single cell RNA-seq
4
Hi-C
4
MeRIP-seq
4
WGBS
2
FAIRE-seq
2
RRBS
2
small RNA-seq
1
pCHi-C
Assay category
291
Transcription
85
DNA binding
82
DNA accessibility
6
DNA methylation
4
3D chromatin structure
Target of assay
73
histone
73
histone modification
41
broad histone mark
narrow histone mark
29
control
17
transcription factor
8
RNA binding protein
2
nucleotide modification
Date released
129
August, 2017
120
July, 2018
40
October, 2018
39
November, 2019
37
May, 2021
24
May, 2022
18
February, 2023
8
January, 2021
7
March, 2020
7
November, 2018
6
April, 2018
6
July, 2019
6
September, 2017
5
March, 2019
5
October, 2017
4
June, 2019
4
November, 2020
3
October, 2019
2
August, 2021
1
August, 2022
1
February, 2020
1
May, 2019
Available data
403
bam
345
bigWig
275
tsv
196
fastq
97
bed narrowPeak
46
bigBed narrowPeak
21
bed bed3+
16
bed broadPeak
10
tagAlign
6
bed bedMethyl
6
bigBed bedMethyl
6
bigBed broadPeak
6
txt
3
bedpe bed3+
3
hic
1
bedpe
Organism
468
Homo sapiens
Biosample type
473
tissue
315
primary cell
83
cell line
2
in vitro differentiated cells
Organ
534
connective tissue
476
adipose tissue
473
pancreas
317
liver
289
kidney
275
heart
158
bone element
151
brain
blood vessel
115
vasculature
107
limb
73
musculature of body
67
artery
54
eye
35
nerve
23
spleen
20
lung
18
ureter
16
skeleton
15
epithelium
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
ovary
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
445
AMP
28
T1D
Genome assembly (visualization)
385
hg19
360
GRCh38
Lab
410
AMP-T2D consortium
51
Kyle Gaulton, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
1
audit script error
Audit category:
7
missing controlled_by
Audit category:
3
inconsistent control read length
1
inconsistent assembly
lab.title!
Struan F.A. Grant, CHOP
organ_slims!
blood vessel
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
473 results
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total RNA-seq
ChIP-seq
ATAC-seq
snATAC-seq
DNase-seq
single cell RNA-seq
Hi-C
MeRIP-seq
WGBS
FAIRE-seq
RRBS
small RNA-seq
pCHi-C
tissue
islet of Langerhans
278
34
58
7
1
6
3
4
1
1
body of pancreas
3
29
4
4
2
2
pancreas
2
12
4
2
1
2
1
1
1
endocrine pancreas
10
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