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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
66
ChIP-seq
36
DNase-seq
8
ATAC-seq
4
Hi-C
4
total RNA-seq
1
WGBS
Assay category
66
DNA binding
44
DNA accessibility
4
3D chromatin structure
4
Transcription
1
DNA methylation
Target of assay
49
histone
49
histone modification
34
broad histone mark
17
control
15
narrow histone mark
Date released
69
October, 2019
32
June, 2019
7
May, 2019
6
February, 2021
5
July, 2019
February, 2020
Available data
114
bam
92
bed narrowPeak
91
bigWig
84
bigBed narrowPeak
36
bed bed3+
36
bed broadPeak
36
bigBed broadPeak
4
tsv
1
bed bedMethyl
1
bigBed bedMethyl
Organism
119
Homo sapiens
Biosample type
119
tissue
Organ
545
connective tissue
504
pancreas
486
adipose tissue
360
liver
310
heart
299
kidney
253
brain
158
bone element
130
blood vessel
130
vasculature
119
limb
80
musculature of body
71
artery
55
eye
42
nerve
25
spleen
18
ureter
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lung
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
119
AMP
Genome assembly (visualization)
96
GRCh38
96
hg19
Lab
119
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
lab.title!
Xin Sun, UCSD
month_released!
February, 2020
organ_slims!
thymus
BIOSAMPLE
ASSAY
119 results
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ChIP-seq
DNase-seq
ATAC-seq
Hi-C
total RNA-seq
WGBS
tissue
tibial nerve
35
2
1
4
tibial artery
23
2
1
muscle of leg
7
13
1
muscle of arm
17
gastrocnemius medialis
4
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