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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
37
ATAC-seq
27
ChIP-seq
4
DNase-seq
2
single cell RNA-seq
2
total RNA-seq
Assay category
41
DNA accessibility
27
DNA binding
4
Transcription
Target of assay
20
histone
20
histone modification
14
broad histone mark
7
control
6
narrow histone mark
RNA binding protein
1
transcription factor
Date released
35
February, 2023
26
October, 2019
4
May, 2019
2
August, 2021
2
February, 2020
2
June, 2019
1
July, 2019
Available data
61
bed narrowPeak
33
bam
26
bigWig
24
bigBed narrowPeak
4
bed bed3+
4
bed broadPeak
4
bigBed broadPeak
4
tsv
Organism
72
Homo sapiens
Biosample type
72
tissue
66
cell line
2
primary cell
Organ
542
connective tissue
497
pancreas
483
adipose tissue
359
liver
303
heart
298
kidney
265
brain
158
bone element
130
blood vessel
130
vasculature
122
limb
82
musculature of body
72
artery
56
eye
43
nerve
25
spleen
18
ureter
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lung
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
72
AMP
Genome assembly (visualization)
61
GRCh38
26
hg19
Lab
72
AMP-T2D consortium
lab.title!
Xin Sun, UCSD
target.investigated_as!
RNA binding protein
BIOSAMPLE
ASSAY
72 results
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ATAC-seq
ChIP-seq
DNase-seq
single cell RNA-seq
total RNA-seq
tissue
coronary artery
36
4
2
1
tibial artery
1
23
2
1
pulmonary artery
2
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