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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
464
total RNA-seq
109
ChIP-seq
19
ATAC-seq
6
WGBS
4
DNase-seq
2
small RNA-seq
1
RNA microarray
1
pCHi-C
Assay category
466
Transcription
109
DNA binding
23
DNA accessibility
6
DNA methylation
Target of assay
57
histone
57
histone modification
36
broad histone mark
35
control
21
narrow histone mark
17
transcription factor
5
RNA binding protein
Date released
452
February, 2021
57
August, 2017
44
October, 2019
23
October, 2018
10
July, 2019
9
February, 2023
3
February, 2020
1
August, 2021
1
January, 2018
1
June, 2019
1
March, 2020
1
May, 2023
1
November, 2018
1
November, 2019
1
October, 2017
Available data
548
bam
512
bigWig
462
tsv
48
bed narrowPeak
43
fastq
36
bigBed narrowPeak
8
bed bed3+
8
tagAlign
5
bed broadPeak
4
bed bed3
4
bigBed broadPeak
4
txt
2
bed bedMethyl
2
bigBed bedMethyl
Organism
605
Homo sapiens
Biosample type
606
tissue
97
in vitro differentiated cells
39
primary cell
1
stem cell
Organ
547
connective tissue
505
pancreas
488
adipose tissue
361
liver
313
heart
299
kidney
265
brain
158
bone element
133
blood vessel
133
vasculature
122
limb
82
musculature of body
73
artery
56
eye
43
nerve
25
spleen
18
ureter
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lung
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
606
AMP
Genome assembly (visualization)
525
hg19
519
GRCh38
Lab
606
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
12
missing controlled_by
lab.title!
Xin Sun, UCSD
BIOSAMPLE
ASSAY
606 results
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total RNA-seq
ChIP-seq
ATAC-seq
WGBS
DNase-seq
small RNA-seq
RNA microarray
pCHi-C
tissue
adipose tissue
382
2
3
3
1
bone tissue
58
tibial nerve
5
35
1
2
subcutaneous abdominal adipose tissue
36
3
subcutaneous adipose tissue
7
12
1
1
1
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