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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
75
ATAC-seq
68
DNase-seq
64
single cell RNA-seq
50
total RNA-seq
27
ChIP-seq
6
snATAC-seq
3
snDrop-seq
2
RNA microarray
2
pCHi-C
1
FAIRE-seq
1
Hi-C
1
RRBS
1
small RNA-seq
Assay category
150
DNA accessibility
115
Transcription
27
DNA binding
1
3D chromatin structure
1
DNA methylation
Target of assay
20
histone
20
histone modification
10
broad histone mark
10
narrow histone mark
6
control
1
RNA binding protein
1
transcription factor
Date released
128
August, 2021
68
June, 2019
47
September, 2023
23
April, 2019
14
May, 2023
8
February, 2021
4
July, 2019
4
October, 2019
3
December, 2019
1
March, 2020
1
May, 2021
Available data
153
bed narrowPeak
98
bam
91
bigWig
87
bigBed narrowPeak
68
bed bed3+
68
bed broadPeak
68
bigBed broadPeak
64
xls
62
txt
13
tsv
5
csv
1
bed bedMethyl
1
bigBed bedMethyl
1
hic
Organism
301
Homo sapiens
Biosample type
301
tissue
36
primary cell
19
cell line
Organ
547
connective tissue
505
pancreas
488
adipose tissue
361
liver
313
heart
299
kidney
265
brain
158
bone element
133
blood vessel
133
vasculature
122
limb
82
musculature of body
73
artery
56
eye
43
nerve
25
spleen
18
ureter
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lung
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
253
AMP
47
KPMP
1
T1D
Genome assembly (visualization)
165
GRCh38
92
hg19
Lab
142
Katalin Susztak, Upenn
111
AMP-T2D consortium
47
KPMP
1
Kyle Gaulton, UCSD
Audit category:
7
audit script error
lab.title!
Xin Sun, UCSD
BIOSAMPLE
ASSAY
301 results
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ATAC-seq
DNase-seq
single cell RNA-seq
total RNA-seq
ChIP-seq
snATAC-seq
snDrop-seq
RNA microarray
pCHi-C
FAIRE-seq
Hi-C
RRBS
small RNA-seq
tissue
kidney
75
13
64
49
27
6
1
1
1
renal cortex interstitium
11
renal pelvis
10
right kidney
10
left kidney
9
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