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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
949
total RNA-seq
778
ChIP-seq
178
DNase-seq
160
single cell RNA-seq
131
ATAC-seq
87
RNA microarray
27
WGBS
24
pCHi-C
16
small RNA-seq
13
Hi-C
11
RRBS
4
FAIRE-seq
3
snDrop-seq
2
snATAC-seq
Assay category
1125
Transcription
778
DNA binding
315
DNA accessibility
38
DNA methylation
13
3D chromatin structure
Target of assay
593
histone modification
592
histone
309
narrow histone mark
283
broad histone mark
185
control
transcription factor
23
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
545
February, 2021
261
August, 2017
242
October, 2019
193
May, 2020
163
June, 2019
120
July, 2018
111
May, 2019
99
August, 2021
82
November, 2017
77
February, 2023
77
July, 2019
74
April, 2019
59
October, 2018
47
September, 2023
40
March, 2020
40
November, 2019
38
May, 2021
25
February, 2020
22
October, 2017
19
November, 2018
17
December, 2017
7
January, 2019
6
April, 2018
6
September, 2017
4
December, 2018
3
December, 2019
2
January, 2018
2
May, 2022
1
August, 2022
1
May, 2023
Available data
1793
bam
1623
bigWig
1075
tsv
772
bed narrowPeak
496
bigBed narrowPeak
272
fastq
238
tagAlign
211
bed broadPeak
192
bed bed3+
176
bigBed broadPeak
94
txt
25
bed bedMethyl
25
bigBed bedMethyl
9
bedpe bed3+
9
hic
6
csv
5
bed bed3
1
tagAlign bed3+
Organism
2375
Homo sapiens
Biosample type
2383
tissue
514
primary cell
303
in vitro differentiated cells
265
cell line
8
stem cell
Organ
530
connective tissue
471
adipose tissue
425
pancreas
282
liver
266
heart
265
brain
158
bone element
156
kidney
130
blood vessel
130
vasculature
122
limb
82
musculature of body
72
artery
56
eye
43
nerve
19
spleen
18
ureter
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
1
adrenal gland
1
esophagus
1
large intestine
1
lung
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
thymus
1
urinary bladder
Project
2332
AMP
47
KPMP
4
T1D
Genome assembly (visualization)
1653
GRCh38
1624
hg19
Lab
2336
AMP-T2D consortium
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
35
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
91
inconsistent ontology term
9
audit script error
Audit category:
8
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
lab.title!
Katalin Susztak, Upenn
target.investigated_as!
transcription factor
BIOSAMPLE
ASSAY
2383 results
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total RNA-seq
ChIP-seq
DNase-seq
single cell RNA-seq
ATAC-seq
RNA microarray
WGBS
pCHi-C
small RNA-seq
Hi-C
RRBS
FAIRE-seq
snDrop-seq
snATAC-seq
tissue
islet of Langerhans
280
64
1
6
34
4
1
1
1
1
adipose tissue
382
2
3
3
1
liver
147
108
2
1
3
1
1
1
1
kidney
26
13
53
1
1
bone element
84
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