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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
985
total RNA-seq
751
ChIP-seq
161
ATAC-seq
139
DNase-seq
118
single cell RNA-seq
87
RNA microarray
24
WGBS
23
pCHi-C
16
small RNA-seq
11
RRBS
9
Hi-C
8
snATAC-seq
4
FAIRE-seq
3
snDrop-seq
Assay category
1119
Transcription
751
DNA binding
312
DNA accessibility
35
DNA methylation
9
3D chromatin structure
Target of assay
508
histone modification
507
histone
280
narrow histone mark
227
broad histone mark
157
control
86
transcription factor
20
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
539
February, 2021
284
August, 2017
221
August, 2021
193
May, 2020
173
October, 2019
128
June, 2019
120
July, 2018
82
November, 2017
80
April, 2019
74
October, 2018
65
July, 2019
58
May, 2019
48
December, 2017
42
February, 2023
40
November, 2019
38
May, 2021
37
March, 2020
26
November, 2018
22
October, 2017
20
February, 2020
15
May, 2023
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
3
December, 2019
2
January, 2018
2
May, 2022
1
August, 2022
Available data
1707
bam
1571
bigWig
1055
tsv
735
bed narrowPeak
435
bigBed narrowPeak
351
fastq
238
tagAlign
172
bed broadPeak
166
bed bed3+
151
txt
137
bigBed broadPeak
64
xls
23
bed bedMethyl
23
bigBed bedMethyl
9
hic
8
bedpe bed3+
6
csv
5
bed bed3
1
tagAlign bed3+
Organism
2331
Homo sapiens
Biosample type
2339
tissue
549
cell line
487
primary cell
340
in vitro differentiated cells
8
stem cell
Organ
547
connective tissue
488
adipose tissue
442
pancreas
321
liver
273
heart
265
brain
252
kidney
158
bone element
133
blood vessel
vasculature
limb
82
musculature of body
73
artery
56
eye
43
nerve
25
spleen
18
ureter
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
1
adrenal gland
1
esophagus
1
large intestine
1
lung
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
thymus
1
urinary bladder
Project
2335
AMP
4
T1D
Genome assembly (visualization)
1636
GRCh38
1568
hg19
Lab
2197
AMP-T2D consortium
142
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
90
inconsistent ontology term
27
inconsistent control
9
audit script error
Audit category:
26
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
organ_slims!
limb
vasculature
BIOSAMPLE
ASSAY
2339 results
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total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
single cell RNA-seq
RNA microarray
WGBS
pCHi-C
small RNA-seq
RRBS
Hi-C
snATAC-seq
FAIRE-seq
snDrop-seq
tissue
islet of Langerhans
280
70
34
1
6
4
1
1
1
1
adipose tissue
382
2
3
3
1
liver
147
145
2
1
3
1
1
1
1
kidney
49
27
75
13
17
1
1
6
1
bone element
84
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