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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
460
total RNA-seq
103
ChIP-seq
34
DNase-seq
7
ATAC-seq
7
WGBS
6
Hi-C
4
RRBS
3
small RNA-seq
2
pCHi-C
1
RNA microarray
1
single cell RNA-seq
1
snATAC-seq
Assay category
464
Transcription
103
DNA binding
42
DNA accessibility
11
DNA methylation
6
3D chromatin structure
Target of assay
58
histone
58
histone modification
36
broad histone mark
28
control
22
narrow histone mark
17
transcription factor
5
RNA binding protein
Date released
444
February, 2021
83
August, 2017
33
June, 2019
23
October, 2018
17
July, 2019
7
May, 2019
6
March, 2020
4
February, 2020
2
January, 2018
2
May, 2022
2
October, 2019
1
August, 2021
1
February, 2023
1
May, 2023
1
November, 2018
1
November, 2019
1
October, 2017
Available data
542
bam
538
bigWig
464
tsv
64
bed narrowPeak
48
bed broadPeak
48
bigBed narrowPeak
45
fastq
39
bed bed3+
34
bigBed broadPeak
23
tagAlign
5
bed bedMethyl
5
bigBed bedMethyl
2
bedpe bed3+
2
hic
1
txt
Organism
628
Homo sapiens
Biosample type
629
tissue
97
in vitro differentiated cells
53
primary cell
1
stem cell
Organ
547
connective tissue
505
pancreas
488
adipose tissue
361
liver
313
heart
299
kidney
265
brain
158
bone element
133
blood vessel
vasculature
122
limb
82
musculature of body
73
artery
56
eye
43
nerve
25
spleen
18
ureter
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lung
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
629
AMP
Genome assembly (visualization)
543
hg19
522
GRCh38
Lab
629
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
1
audit script error
Audit category:
12
missing controlled_by
month_released!
April, 2020
organ_slims!
vasculature
BIOSAMPLE
ASSAY
629 results
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total RNA-seq
ChIP-seq
DNase-seq
ATAC-seq
WGBS
Hi-C
RRBS
small RNA-seq
pCHi-C
RNA microarray
single cell RNA-seq
snATAC-seq
tissue
adipose tissue
382
2
3
3
1
bone tissue
58
subcutaneous abdominal adipose tissue
36
3
skeletal muscle tissue
1
22
1
4
1
1
1
subcutaneous adipose tissue
7
12
1
1
1
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