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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
892
total RNA-seq
731
ChIP-seq
190
ATAC-seq
176
DNase-seq
86
RNA microarray
74
single cell RNA-seq
25
pCHi-C
22
snATAC-seq
18
WGBS
16
small RNA-seq
13
Hi-C
6
RRBS
4
MeRIP-seq
3
FAIRE-seq
3
snDrop-seq
Assay category
982
Transcription
731
DNA binding
391
DNA accessibility
24
DNA methylation
13
3D chromatin structure
Target of assay
504
histone
504
histone modification
274
narrow histone mark
230
broad histone mark
158
control
71
transcription factor
26
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
545
February, 2021
August, 2017
242
October, 2019
August, 2021
193
May, 2020
163
June, 2019
120
July, 2018
115
May, 2019
95
February, 2023
82
November, 2017
80
April, 2019
77
July, 2019
74
October, 2018
66
May, 2022
48
December, 2017
47
September, 2023
40
March, 2020
40
May, 2021
40
May, 2024
40
November, 2019
26
November, 2018
25
February, 2020
23
October, 2017
19
April, 2020
15
May, 2023
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
Available data
1736
bam
1594
bigWig
888
tsv
854
bed narrowPeak
539
bigBed narrowPeak
201
fastq
186
bed broadPeak
179
bed bed3+
179
tagAlign
176
bigBed broadPeak
100
txt
20
bed bedMethyl
20
bigBed bedMethyl
9
bedpe bed3+
9
hic
6
csv
5
bed bed3
1
tagAlign bed3+
Organism
2258
Homo sapiens
Biosample type
2259
tissue
1025
primary cell
618
cell line
245
in vitro differentiated cells
10
stem cell
Organ
489
connective tissue
430
adipose tissue
351
pancreas
307
liver
265
brain
221
heart
171
kidney
158
bone element
127
blood vessel
127
vasculature
122
limb
71
artery
56
eye
56
musculature of body
43
nerve
25
spleen
20
lung
18
ureter
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2162
AMP
47
KPMP
31
T1D
19
LungMap
Genome assembly (visualization)
1635
GRCh38
1571
hg19
Lab
2042
AMP-T2D consortium
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
14
Katalin Susztak, Upenn
4
Rohit N. Kulkarni, M.D., Ph.D.
1
Stephen Parker, UMich
Audit category:
91
inconsistent ontology term
27
inconsistent control
9
audit script error
Audit category:
4
missing controlled_by
Audit category:
1
inconsistent control read length
month_released!
August, 2017
August, 2021
February, 2018
March, 2019
BIOSAMPLE
ASSAY
2259 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
RNA microarray
single cell RNA-seq
pCHi-C
snATAC-seq
WGBS
small RNA-seq
Hi-C
RRBS
MeRIP-seq
FAIRE-seq
snDrop-seq
tissue
adipose tissue
382
3
1
islet of Langerhans
202
29
64
6
4
7
1
1
4
liver
167
97
20
2
1
1
1
1
kidney
27
11
13
56
1
1
bone element
84
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