Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
892
total RNA-seq
457
ChIP-seq
194
ATAC-seq
176
DNase-seq
86
RNA microarray
74
single cell RNA-seq
24
pCHi-C
22
snATAC-seq
18
WGBS
16
small RNA-seq
14
Hi-C
6
RRBS
4
MeRIP-seq
3
FAIRE-seq
3
snDrop-seq
Assay category
982
Transcription
457
DNA binding
395
DNA accessibility
24
DNA methylation
14
3D chromatin structure
Target of assay
500
histone
500
histone modification
narrow histone mark
230
broad histone mark
158
control
71
transcription factor
26
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
545
February, 2021
August, 2017
August, 2021
166
May, 2020
163
June, 2019
120
July, 2018
113
October, 2019
95
February, 2023
82
May, 2019
77
July, 2019
66
May, 2022
63
October, 2018
57
April, 2019
54
November, 2017
47
September, 2023
46
December, 2017
40
May, 2021
40
November, 2019
37
March, 2020
26
November, 2018
25
February, 2020
25
May, 2024
21
October, 2017
19
April, 2020
15
May, 2023
8
January, 2021
7
December, 2018
6
April, 2018
6
September, 2017
5
January, 2019
5
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
Available data
1512
bam
1352
bigWig
887
tsv
612
bed narrowPeak
437
bigBed narrowPeak
192
fastq
182
bed broadPeak
179
bed bed3+
176
bigBed broadPeak
100
txt
89
tagAlign
20
bed bedMethyl
20
bigBed bedMethyl
10
hic
9
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
Organism
1988
Homo sapiens
Biosample type
1989
tissue
934
primary cell
601
cell line
252
in vitro differentiated cells
9
stem cell
Organ
488
connective tissue
430
adipose tissue
342
pancreas
276
liver
183
heart
161
kidney
158
bone element
151
brain
109
blood vessel
109
vasculature
107
limb
65
artery
54
eye
54
musculature of body
35
nerve
23
spleen
20
lung
18
ureter
16
skeleton
15
epithelium
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
ovary
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
1894
AMP
47
KPMP
29
T1D
19
LungMap
Genome assembly (visualization)
1404
GRCh38
1361
hg19
Lab
1782
AMP-T2D consortium
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
25
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
14
Katalin Susztak, Upenn
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
89
inconsistent ontology term
27
inconsistent control
9
audit script error
Audit category:
3
missing controlled_by
month_released!
August, 2017
August, 2021
organ_slims!
ovary
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
1989 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
RNA microarray
single cell RNA-seq
pCHi-C
snATAC-seq
WGBS
small RNA-seq
Hi-C
RRBS
MeRIP-seq
FAIRE-seq
snDrop-seq
tissue
adipose tissue
382
3
1
islet of Langerhans
202
6
68
6
4
7
2
1
4
liver
167
68
20
2
1
1
1
1
kidney
17
11
13
56
1
1
bone element
84
+ See 109 more…
See all biosamples
Download