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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
942
total RNA-seq
721
ChIP-seq
258
ATAC-seq
180
single cell RNA-seq
167
DNase-seq
87
RNA microarray
28
snATAC-seq
25
pCHi-C
16
Hi-C
16
small RNA-seq
12
WGBS
6
RRBS
4
MeRIP-seq
3
snDrop-seq
2
FAIRE-seq
Assay category
1138
Transcription
721
DNA binding
455
DNA accessibility
18
DNA methylation
16
3D chromatin structure
Target of assay
504
histone
504
histone modification
274
narrow histone mark
230
broad histone mark
155
control
64
transcription factor
26
RNA binding protein
2
chromatin remodeller
2
nucleotide modification
Date released
545
February, 2021
August, 2017
242
October, 2019
229
August, 2021
193
May, 2020
163
June, 2019
120
July, 2018
115
May, 2019
95
February, 2023
82
November, 2017
80
April, 2019
77
July, 2019
74
October, 2018
66
May, 2022
48
December, 2017
47
September, 2023
40
March, 2020
40
May, 2021
40
May, 2024
40
November, 2019
November, 2018
25
February, 2020
23
October, 2017
19
April, 2020
15
May, 2023
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
Available data
1711
bam
1571
bigWig
987
tsv
901
bed narrowPeak
522
bigBed narrowPeak
179
tagAlign
178
bed broadPeak
176
fastq
170
bed bed3+
167
bigBed broadPeak
157
txt
64
xls
14
bed bedMethyl
14
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
2465
Homo sapiens
Biosample type
2467
tissue
1028
primary cell
601
cell line
287
in vitro differentiated cells
10
stem cell
Organ
489
connective tissue
430
adipose tissue
351
pancreas
313
heart
300
liver
299
kidney
263
brain
158
bone element
133
blood vessel
133
vasculature
122
limb
73
artery
56
eye
56
musculature of body
43
nerve
20
lung
18
ureter
16
skeleton
16
spleen
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2370
AMP
47
KPMP
31
T1D
19
LungMap
Genome assembly (visualization)
1679
GRCh38
1558
hg19
Lab
2115
AMP-T2D consortium
142
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
91
inconsistent ontology term
27
inconsistent control
9
audit script error
Audit category:
4
missing controlled_by
Audit category:
1
inconsistent control read length
month_released!
August, 2017
February, 2018
November, 2018
BIOSAMPLE
ASSAY
2467 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
DNase-seq
RNA microarray
snATAC-seq
pCHi-C
Hi-C
small RNA-seq
WGBS
RRBS
MeRIP-seq
snDrop-seq
FAIRE-seq
tissue
adipose tissue
382
3
1
islet of Langerhans
203
29
68
6
7
4
3
1
4
liver
167
93
20
1
1
1
1
kidney
49
27
75
64
13
6
1
1
1
bone element
84
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