Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
708
ChIP-seq
521
total RNA-seq
247
ATAC-seq
180
single cell RNA-seq
174
DNase-seq
86
RNA microarray
28
snATAC-seq
24
pCHi-C
12
Hi-C
6
WGBS
4
MeRIP-seq
3
snDrop-seq
1
FAIRE-seq
Assay category
708
DNA binding
701
Transcription
450
DNA accessibility
12
3D chromatin structure
6
DNA methylation
Target of assay
504
histone
504
histone modification
274
narrow histone mark
230
broad histone mark
140
control
66
transcription factor
21
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
241
October, 2019
228
August, 2021
August, 2017
193
May, 2020
162
June, 2019
159
February, 2021
120
July, 2018
115
May, 2019
94
February, 2023
82
November, 2017
80
April, 2019
July, 2019
66
May, 2022
51
October, 2018
48
December, 2017
47
September, 2023
40
May, 2021
40
May, 2024
39
March, 2020
39
November, 2019
25
November, 2018
22
February, 2020
22
October, 2017
19
April, 2020
14
May, 2023
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
3
December, 2019
1
August, 2022
1
January, 2018
Available data
1260
bam
1135
bigWig
901
bed narrowPeak
550
tsv
529
bigBed narrowPeak
185
bed broadPeak
179
tagAlign
177
bed bed3+
177
fastq
174
bigBed broadPeak
157
txt
64
xls
11
hic
10
bedpe bed3+
6
bed bedMethyl
6
bigBed bedMethyl
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
1993
Homo sapiens
Biosample type
1994
tissue
998
primary cell
662
cell line
325
in vitro differentiated cells
10
stem cell
Organ
480
connective tissue
adipose tissue
352
pancreas
299
liver
295
kidney
293
heart
254
brain
158
bone element
126
blood vessel
126
vasculature
117
limb
72
artery
56
eye
49
musculature of body
43
nerve
25
spleen
20
lung
18
ureter
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
skin of body
1
small intestine
spinal cord
1
stomach
1
urinary bladder
Project
1897
AMP
47
KPMP
31
T1D
19
LungMap
Genome assembly (visualization)
1244
GRCh38
1116
hg19
Lab
1642
AMP-T2D consortium
142
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
90
inconsistent ontology term
27
inconsistent control
9
audit script error
Audit category:
4
missing controlled_by
Audit category:
1
inconsistent control read length
month_released!
August, 2017
July, 2019
organ_slims!
adipose tissue
spinal cord
BIOSAMPLE
ASSAY
1994 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
DNase-seq
RNA microarray
snATAC-seq
pCHi-C
Hi-C
WGBS
MeRIP-seq
snDrop-seq
FAIRE-seq
tissue
islet of Langerhans
29
203
68
6
7
4
3
4
liver
97
165
20
1
2
1
1
kidney
27
49
75
64
13
6
1
bone element
84
heart left ventricle
35
1
18
3
1
1
+ See 163 more…
See all biosamples
Download