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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
923
total RNA-seq
705
ChIP-seq
238
ATAC-seq
180
single cell RNA-seq
176
DNase-seq
87
RNA microarray
28
snATAC-seq
25
pCHi-C
18
WGBS
16
small RNA-seq
15
Hi-C
6
RRBS
4
MeRIP-seq
3
FAIRE-seq
3
snDrop-seq
Assay category
1119
Transcription
705
DNA binding
445
DNA accessibility
24
DNA methylation
15
3D chromatin structure
Target of assay
504
histone
504
histone modification
274
narrow histone mark
230
broad histone mark
158
control
71
transcription factor
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
545
February, 2021
August, 2017
242
October, 2019
229
August, 2021
193
May, 2020
163
June, 2019
120
July, 2018
111
May, 2019
95
February, 2023
82
November, 2017
77
July, 2019
76
April, 2019
66
May, 2022
63
October, 2018
47
September, 2023
46
December, 2017
40
March, 2020
40
May, 2021
November, 2019
35
May, 2024
26
November, 2018
25
February, 2020
23
October, 2017
19
April, 2020
15
May, 2023
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
Available data
1677
bam
1550
bigWig
968
tsv
873
bed narrowPeak
519
bigBed narrowPeak
189
fastq
187
bed broadPeak
179
bed bed3+
179
tagAlign
176
bigBed broadPeak
157
txt
64
xls
20
bed bedMethyl
20
bigBed bedMethyl
10
hic
9
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
2425
Homo sapiens
Biosample type
2427
tissue
1021
primary cell
582
cell line
314
in vitro differentiated cells
10
stem cell
Organ
484
connective tissue
425
adipose tissue
313
pancreas
305
liver
303
heart
298
kidney
265
brain
158
bone element
130
blood vessel
130
vasculature
122
limb
72
artery
56
eye
56
musculature of body
43
nerve
25
spleen
20
lung
18
ureter
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2330
AMP
47
KPMP
31
T1D
19
LungMap
Genome assembly (visualization)
1637
GRCh38
1515
hg19
Lab
2080
AMP-T2D consortium
142
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
35
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
90
inconsistent ontology term
27
inconsistent control
9
audit script error
Audit category:
4
missing controlled_by
Audit category:
1
inconsistent control read length
month_released!
August, 2017
November, 2019
target.investigated_as!
RNA binding protein
BIOSAMPLE
ASSAY
2427 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
DNase-seq
RNA microarray
snATAC-seq
pCHi-C
WGBS
small RNA-seq
Hi-C
RRBS
MeRIP-seq
FAIRE-seq
snDrop-seq
tissue
adipose tissue
382
3
1
liver
167
96
20
1
2
1
1
1
islet of Langerhans
184
29
49
6
7
4
2
1
4
kidney
49
26
75
64
13
6
1
1
1
bone element
84
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