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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
751
total RNA-seq
434
ChIP-seq
222
ATAC-seq
179
single cell RNA-seq
151
DNase-seq
87
RNA microarray
28
snATAC-seq
20
pCHi-C
17
WGBS
14
Hi-C
13
small RNA-seq
6
RRBS
4
MeRIP-seq
3
FAIRE-seq
3
snDrop-seq
Assay category
943
Transcription
434
DNA binding
404
DNA accessibility
23
DNA methylation
14
3D chromatin structure
Target of assay
304
histone
304
histone modification
188
broad histone mark
116
narrow histone mark
96
control
36
transcription factor
24
RNA binding protein
3
other context
3
other post-translational modification
2
nucleotide modification
Date released
544
February, 2021
October, 2019
August, 2017
229
August, 2021
145
June, 2019
120
July, 2018
115
May, 2019
95
February, 2023
82
November, 2017
80
April, 2019
74
October, 2018
69
July, 2019
47
September, 2023
40
May, 2021
40
May, 2024
40
November, 2019
37
March, 2020
26
May, 2022
24
February, 2020
23
October, 2017
19
April, 2020
19
November, 2018
15
May, 2023
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
Available data
1277
bam
1175
bigWig
826
tsv
659
bed narrowPeak
431
bigBed narrowPeak
162
bed broadPeak
157
txt
154
bed bed3+
151
bigBed broadPeak
147
fastq
80
tagAlign
64
xls
20
bed bedMethyl
20
bigBed bedMethyl
9
hic
8
bedpe bed3+
5
bed bed3
5
csv
1
bedpe
Organism
1930
Homo sapiens
Biosample type
1932
tissue
982
primary cell
303
in vitro differentiated cells
231
cell line
10
stem cell
Organ
488
connective tissue
430
adipose tissue
355
pancreas
305
heart
liver
295
kidney
179
brain
158
bone element
107
blood vessel
107
vasculature
56
musculature of body
53
limb
47
artery
35
eye
25
spleen
20
lung
ureter
16
skeleton
15
epithelium
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
nerve
1
ovary
1
pericardium
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
1835
AMP
47
KPMP
31
T1D
19
LungMap
Genome assembly (visualization)
1309
GRCh38
1152
hg19
Lab
1620
AMP-T2D consortium
142
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
89
inconsistent ontology term
9
audit script error
Audit category:
4
missing controlled_by
Audit category:
1
inconsistent control read length
month_released!
August, 2017
October, 2019
organ_slims!
liver
ureter
BIOSAMPLE
ASSAY
1932 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
DNase-seq
RNA microarray
snATAC-seq
pCHi-C
WGBS
Hi-C
small RNA-seq
RRBS
MeRIP-seq
FAIRE-seq
snDrop-seq
tissue
adipose tissue
382
2
1
islet of Langerhans
189
8
55
6
7
3
1
4
kidney
49
23
75
64
13
6
1
1
1
bone element
84
heart left ventricle
3
35
2
18
3
1
4
1
1
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