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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
920
total RNA-seq
536
ChIP-seq
242
ATAC-seq
180
single cell RNA-seq
154
DNase-seq
87
RNA microarray
28
snATAC-seq
21
pCHi-C
18
WGBS
16
small RNA-seq
15
Hi-C
6
RRBS
4
MeRIP-seq
3
FAIRE-seq
3
snDrop-seq
Assay category
1116
Transcription
536
DNA binding
427
DNA accessibility
24
DNA methylation
15
3D chromatin structure
Target of assay
336
histone
336
histone modification
191
broad histone mark
145
narrow histone mark
131
control
71
transcription factor
26
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
545
February, 2021
August, 2017
October, 2019
229
August, 2021
193
May, 2020
145
June, 2019
120
July, 2018
115
May, 2019
95
February, 2023
82
November, 2017
80
April, 2019
77
July, 2019
74
October, 2018
66
May, 2022
48
December, 2017
47
September, 2023
40
March, 2020
40
May, 2021
40
May, 2024
40
November, 2019
26
November, 2018
25
February, 2020
23
October, 2017
19
April, 2020
15
May, 2023
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
Available data
1533
bam
1416
bigWig
979
tsv
749
bed narrowPeak
474
bigBed narrowPeak
202
fastq
165
bed broadPeak
157
bed bed3+
157
txt
154
bigBed broadPeak
130
tagAlign
64
xls
20
bed bedMethyl
20
bigBed bedMethyl
10
hic
9
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
Organism
2231
Homo sapiens
Biosample type
2233
tissue
995
primary cell
632
cell line
318
in vitro differentiated cells
10
stem cell
Organ
488
connective tissue
430
adipose tissue
355
pancreas
305
heart
301
liver
295
kidney
179
brain
158
bone element
107
blood vessel
107
vasculature
56
musculature of body
53
limb
47
artery
35
eye
25
spleen
20
lung
ureter
16
skeleton
15
epithelium
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
nerve
1
ovary
1
pericardium
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2136
AMP
47
KPMP
31
T1D
19
LungMap
Genome assembly (visualization)
1522
GRCh38
1394
hg19
Lab
1881
AMP-T2D consortium
142
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
89
inconsistent ontology term
27
inconsistent control
9
audit script error
Audit category:
4
missing controlled_by
Audit category:
1
inconsistent control read length
month_released!
August, 2017
October, 2019
organ_slims!
ureter
BIOSAMPLE
ASSAY
2233 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
DNase-seq
RNA microarray
snATAC-seq
pCHi-C
WGBS
small RNA-seq
Hi-C
RRBS
MeRIP-seq
FAIRE-seq
snDrop-seq
tissue
adipose tissue
382
2
1
liver
166
92
20
1
2
1
1
1
islet of Langerhans
189
8
55
6
7
3
1
4
kidney
49
23
75
64
13
6
1
1
1
bone element
84
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