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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
950
total RNA-seq
907
ChIP-seq
190
ATAC-seq
178
DNase-seq
84
RNA microarray
73
single cell RNA-seq
25
pCHi-C
15
WGBS
14
snATAC-seq
10
Hi-C
5
RRBS
4
MeRIP-seq
3
snDrop-seq
2
FAIRE-seq
Assay category
1023
Transcription
907
DNA binding
384
DNA accessibility
20
DNA methylation
10
3D chromatin structure
Target of assay
628
histone modification
627
histone
324
narrow histone mark
303
broad histone mark
187
control
94
transcription factor
28
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
545
February, 2021
284
August, 2017
242
October, 2019
August, 2021
193
May, 2020
163
June, 2019
120
July, 2018
115
May, 2019
95
February, 2023
82
November, 2017
80
April, 2019
July, 2019
74
October, 2018
66
May, 2022
48
December, 2017
47
September, 2023
40
March, 2020
40
May, 2021
40
May, 2024
40
November, 2019
26
November, 2018
25
February, 2020
23
October, 2017
19
April, 2020
15
May, 2023
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
December, 2019
2
January, 2018
1
August, 2022
Available data
1843
bam
1709
bigWig
928
tsv
913
bed narrowPeak
559
bigBed narrowPeak
377
fastq
238
tagAlign
213
bed broadPeak
205
bed bed3+
176
bigBed broadPeak
100
txt
11
bed bedMethyl
11
bigBed bedMethyl
10
hic
9
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
2452
Homo sapiens
Biosample type
2460
tissue
1040
primary cell
618
cell line
350
in vitro differentiated cells
10
stem cell
Organ
536
connective tissue
489
pancreas
477
adipose tissue
353
liver
254
brain
201
heart
164
kidney
158
bone element
120
blood vessel
120
vasculature
117
limb
75
musculature of body
70
artery
56
eye
43
nerve
25
spleen
20
lung
18
ureter
16
skeleton
14
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2371
AMP
47
KPMP
23
T1D
19
LungMap
Genome assembly (visualization)
1734
GRCh38
1694
hg19
Lab
2246
AMP-T2D consortium
47
KPMP
44
Kyle Gaulton, UCSD
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
14
Katalin Susztak, Upenn
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
91
inconsistent ontology term
27
inconsistent control
7
audit script error
Audit category:
26
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
month_released!
August, 2021
December, 2019
January, 2021
July, 2019
BIOSAMPLE
ASSAY
2460 results
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total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
RNA microarray
single cell RNA-seq
pCHi-C
WGBS
snATAC-seq
Hi-C
RRBS
MeRIP-seq
snDrop-seq
FAIRE-seq
tissue
islet of Langerhans
291
71
68
1
6
4
3
2
4
1
adipose tissue
382
2
3
1
3
liver
165
145
20
2
1
1
3
1
1
kidney
27
11
13
55
bone element
84
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