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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
966
total RNA-seq
784
ChIP-seq
153
ATAC-seq
151
DNase-seq
86
RNA microarray
73
single cell RNA-seq
22
pCHi-C
22
snATAC-seq
19
WGBS
15
small RNA-seq
10
Hi-C
10
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
Assay category
1054
Transcription
784
DNA binding
330
DNA accessibility
29
DNA methylation
10
3D chromatin structure
Target of assay
533
histone modification
532
histone
286
narrow histone mark
246
broad histone mark
171
control
82
transcription factor
18
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
545
February, 2021
284
August, 2017
234
October, 2019
193
May, 2020
August, 2021
136
June, 2019
120
July, 2018
94
May, 2019
82
November, 2017
74
October, 2018
66
May, 2022
59
February, 2023
57
July, 2019
48
December, 2017
47
September, 2023
40
November, 2019
38
May, 2021
33
March, 2020
26
November, 2018
23
April, 2019
23
October, 2017
22
February, 2020
19
April, 2020
15
May, 2023
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
Available data
1774
bam
1615
bigWig
958
tsv
747
bed narrowPeak
473
bigBed narrowPeak
376
fastq
238
tagAlign
185
bed broadPeak
178
bed bed3+
149
bigBed broadPeak
100
txt
18
bed bedMethyl
18
bigBed bedMethyl
6
bedpe bed3+
6
csv
6
hic
5
bed bed3
1
tagAlign bed3+
Organism
2314
Homo sapiens
Biosample type
2322
tissue
1071
primary cell
552
cell line
312
in vitro differentiated cells
10
stem cell
Organ
546
connective tissue
498
pancreas
487
adipose tissue
361
liver
265
brain
heart
171
kidney
158
bone element
127
blood vessel
127
vasculature
122
limb
82
musculature of body
71
artery
56
eye
43
nerve
25
spleen
20
lung
18
ureter
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2225
AMP
47
KPMP
31
T1D
19
LungMap
Genome assembly (visualization)
1638
hg19
1602
GRCh38
Lab
2145
AMP-T2D consortium
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
19
Xin Sun, UCSD
14
Katalin Susztak, Upenn
4
Rohit N. Kulkarni, M.D., Ph.D.
1
Stephen Parker, UMich
Audit category:
91
inconsistent ontology term
27
inconsistent control
9
audit script error
Audit category:
26
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
month_released!
August, 2021
February, 2018
March, 2019
organ_slims!
heart
BIOSAMPLE
ASSAY
2322 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
RNA microarray
single cell RNA-seq
pCHi-C
snATAC-seq
WGBS
small RNA-seq
Hi-C
RRBS
FAIRE-seq
MeRIP-seq
snDrop-seq
tissue
islet of Langerhans
291
71
64
1
6
4
7
1
1
1
4
adipose tissue
382
2
3
1
3
liver
167
145
20
2
1
1
3
1
1
1
kidney
27
11
13
56
1
1
bone element
84
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