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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
919
total RNA-seq
907
ChIP-seq
184
ATAC-seq
178
DNase-seq
74
single cell RNA-seq
27
WGBS
25
pCHi-C
22
snATAC-seq
16
small RNA-seq
14
Hi-C
11
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
2
RNA microarray
Assay category
1009
Transcription
907
DNA binding
388
DNA accessibility
38
DNA methylation
14
3D chromatin structure
Target of assay
628
histone modification
627
histone
324
narrow histone mark
303
broad histone mark
187
control
94
transcription factor
28
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
395
February, 2021
284
August, 2017
242
October, 2019
August, 2021
193
May, 2020
163
June, 2019
120
July, 2018
115
May, 2019
87
February, 2023
82
November, 2017
80
April, 2019
77
July, 2019
74
October, 2018
66
May, 2022
48
December, 2017
47
September, 2023
40
March, 2020
40
May, 2021
40
May, 2024
40
November, 2019
26
November, 2018
25
February, 2020
23
October, 2017
19
April, 2020
15
May, 2023
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
Available data
1841
bam
1714
bigWig
919
tsv
912
bed narrowPeak
561
bigBed narrowPeak
377
fastq
238
tagAlign
213
bed broadPeak
205
bed bed3+
176
bigBed broadPeak
25
bed bedMethyl
25
bigBed bedMethyl
12
txt
10
hic
9
bedpe bed3+
6
csv
1
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
2382
Homo sapiens
Biosample type
2390
tissue
1083
primary cell
618
cell line
352
in vitro differentiated cells
10
stem cell
Organ
546
connective tissue
503
pancreas
487
adipose tissue
361
liver
265
brain
221
heart
171
kidney
bone element
127
blood vessel
127
vasculature
122
limb
82
musculature of body
71
artery
56
eye
43
nerve
25
spleen
20
lung
18
ureter
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2293
AMP
47
KPMP
31
T1D
19
LungMap
Genome assembly (visualization)
1729
GRCh38
1684
hg19
Lab
2168
AMP-T2D consortium
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
14
Katalin Susztak, Upenn
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
27
inconsistent control
9
audit script error
7
inconsistent ontology term
Audit category:
26
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
month_released!
August, 2021
organ_slims!
bone element
BIOSAMPLE
ASSAY
2390 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
single cell RNA-seq
WGBS
pCHi-C
snATAC-seq
small RNA-seq
Hi-C
RRBS
FAIRE-seq
MeRIP-seq
snDrop-seq
RNA microarray
tissue
islet of Langerhans
291
71
68
1
6
4
7
2
1
1
4
adipose tissue
382
2
3
3
1
liver
167
145
20
2
1
3
1
1
1
1
kidney
27
11
13
56
1
1
body of pancreas
3
35
4
4
2
2
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