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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
RNA microarray
63
total RNA-seq
20
ChIP-seq
13
ATAC-seq
2
WGBS
1
DNase-seq
1
pCHi-C
Assay category
63
Transcription
20
DNA binding
14
DNA accessibility
2
DNA methylation
Target of assay
8
control
6
histone
6
histone modification
6
transcription factor
4
broad histone mark
3
other context
3
other post-translational modification
2
narrow histone mark
Date released
150
February, 2021
9
November, 2018
8
February, 2023
7
December, 2018
7
January, 2019
1
February, 2020
1
March, 2020
1
October, 2017
Available data
90
bam
88
txt
74
bigWig
60
tsv
24
fastq
22
bed narrowPeak
13
bigBed narrowPeak
4
bed bed3
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3+
1
bed broadPeak
1
bigBed broadPeak
Organism
184
Homo sapiens
Biosample type
184
tissue
1
primary cell
Organ
546
connective tissue
503
pancreas
487
adipose tissue
361
liver
265
brain
221
heart
171
kidney
158
bone element
127
blood vessel
127
vasculature
122
limb
82
musculature of body
71
artery
56
eye
43
nerve
25
spleen
20
lung
18
ureter
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
184
AMP
Genome assembly (visualization)
84
hg19
82
GRCh38
Lab
184
AMP-T2D consortium
Audit category:
84
inconsistent ontology term
month_released!
August, 2021
BIOSAMPLE
ASSAY
184 results
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RNA microarray
total RNA-seq
ChIP-seq
ATAC-seq
WGBS
DNase-seq
pCHi-C
tissue
bone element
84
bone tissue
58
spleen
20
1
2
1
1
acetabular part of hip bone
1
1
ilium
1
1
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